CAZyme3D

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Entry ID

Information for CAZyme ID: CDS10560.1

Basic Information

GenBank IDCDS10560.1
FamilyCBM19, GH18
Sequence Length570
UniProt IDA0A077WTB6(100,100)Download
Average pLDDT?74.34
CAZy50 ID56592
CAZy50 RepYes, CDS10560.1
Structure ClusterSC_CBM19_clus4, SC_GH18_clus108
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID688394
KingdomEukaryota
PhylumMucoromycota
ClassMucoromycetes
OrderMucorales
FamilyLichtheimiaceae
GenusLichtheimia
SpeciesLichtheimia ramosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIFGKSSIVA  GSIILGFVHQ  AVAASFPSGV  VTYWGQNSAN  SESAQKGLAE  YCDDSSDVLI60
AGFITNYNVG  DLPTLNLANA  CTGTFFEGTN  LLKCDHTCQK  KGKKVLLSLG  GASGAYGFKS120
DDEGKTFANT  LWNLFGGGDS  KTRPFGDSII  DGFDLDIEGG  GSTGYVAMIK  ELRTLFKKDS180
SKDYFITAAP  QCPFPDAMLG  DVISEAGVDA  VNVQFYNNYC  STTGSSFNFD  QWDDWAKNKS240
PNKDVKVFLG  VPGSSTAAGS  GYAKIEDLKP  IIKDLSKYSS  YGGVTVWDAS  QSYNNKDASP300
NFAVALADIV  HGSSSSNDDN  DDSSDAGNDK  TIDPSTTSAT  PGPTSTTSDG  NAETTTTTTT360
SAPSPSSTED  SDNDNDDAEQ  EDTCVQDGDE  CSNDGQYKCV  GSGFAVCNHG  KWVVQQCAAG420
LSCMSTTDGS  SIYCTQTSGS  GNKNTCSNKQ  TLSSKADVAG  PAPKAYNAAR  VTTQLSVKKS480
DDKSFQAVVN  ARRKDSKPFG  STVVVQMTMP  PNIKVTSVDH  GKVQQKGRKV  KIQLKNTKKK540
SMSVVFTIAG  SVDQGSVFNA  PSANSIKFMT  570

Predicted 3D structure by AlphaFold2 with pLDDT = 74.34 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIFGKSSIVA  GSIILGFVHQ  AVAASFPSGV  VTYWGQNSAN  SESAQKGLAE  YCDDSSDVLI60
AGFITNYNVG  DLPTLNLANA  CTGTFFEGTN  LLKCDHTCQK  KGKKVLLSLG  GASGAYGFKS120
DDEGKTFANT  LWNLFGGGDS  KTRPFGDSII  DGFDLDIEGG  GSTGYVAMIK  ELRTLFKKDS180
SKDYFITAAP  QCPFPDAMLG  DVISEAGVDA  VNVQFYNNYC  STTGSSFNFD  QWDDWAKNKS240
PNKDVKVFLG  VPGSSTAAGS  GYAKIEDLKP  IIKDLSKYSS  YGGVTVWDAS  QSYNNKDASP300
NFAVALADIV  HGSSSSNDDN  DDSSDAGNDK  TIDPSTTSAT  PGPTSTTSDG  NAETTTTTTT360
SAPSPSSTED  SDNDNDDAEQ  EDTCVQDGDE  CSNDGQYKCV  GSGFAVCNHG  KWVVQQCAAG420
LSCMSTTDGS  SIYCTQTSGS  GNKNTCSNKQ  TLSSKADVAG  PAPKAYNAAR  VTTQLSVKKS480
DDKSFQAVVN  ARRKDSKPFG  STVVVQMTMP  PNIKVTSVDH  GKVQQKGRKV  KIQLKNTKKK540
SMSVVFTIAG  SVDQGSVFNA  PSANSIKFMT  570

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(30-291)+CBM19(384-424)

MIFGKSSIVA  GSIILGFVHQ  AVAASFPSGV  VTYWGQNSAN  SESAQKGLAE  YCDDSSDVLI60
AGFITNYNVG  DLPTLNLANA  CTGTFFEGTN  LLKCDHTCQK  KGKKVLLSLG  GASGAYGFKS120
DDEGKTFANT  LWNLFGGGDS  KTRPFGDSII  DGFDLDIEGG  GSTGYVAMIK  ELRTLFKKDS180
SKDYFITAAP  QCPFPDAMLG  DVISEAGVDA  VNVQFYNNYC  STTGSSFNFD  QWDDWAKNKS240
PNKDVKVFLG  VPGSSTAAGS  GYAKIEDLKP  IIKDLSKYSS  YGGVTVWDAS  QSYNNKDASP300
NFAVALADIV  HGSSSSNDDN  DDSSDAGNDK  TIDPSTTSAT  PGPTSTTSDG  NAETTTTTTT360
SAPSPSSTED  SDNDNDDAEQ  EDTCVQDGDE  CSNDGQYKCV  GSGFAVCNHG  KWVVQQCAAG420
LSCMSTTDGS  SIYCTQTSGS  GNKNTCSNKQ  TLSSKADVAG  PAPKAYNAAR  VTTQLSVKKS480
DDKSFQAVVN  ARRKDSKPFG  STVVVQMTMP  PNIKVTSVDH  GKVQQKGRKV  KIQLKNTKKK540
SMSVVFTIAG  SVDQGSVFNA  PSANSIKFMT  570

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help