Information for CAZyme ID: CDS04122.1
Basic Information
GenBank ID | CDS04122.1 |
Family | CBM50 |
Sequence Length | 438 |
UniProt ID | A0A077W9W9(100,100)![]() |
Average pLDDT? | 64.73 |
CAZy50 ID | 83302 |
CAZy50 Rep | Yes, CDS04122.1 |
Structure Cluster | SC_CBM50_clus39 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 688394 |
Kingdom | Eukaryota |
Phylum | Mucoromycota |
Class | Mucoromycetes |
Order | Mucorales |
Family | Lichtheimiaceae |
Genus | Lichtheimia |
Species | Lichtheimia ramosa |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MLLQRAITLA AIGILAFTGN HNTAHAEPLA IVHGTSGSDA IKISASYLAA FDNDNEPEPS | 60 |
FELVDTPDDI SSKLISLKKR GSGCADYYTV KSGDTCDKIA KKHGISTKEF MSLNSQINSK | 120 |
CTNLHVHKKY CVEEGSSSSS SSSSSSGSSS SGGCSKKHKV TNSDTCISVA KKYGLSLNEF | 180 |
YNLNSQVHRG SCDNLDTGKY YCVASGGSND KSSSKETSKK DDKKDDDDDV SKKVTNMASK | 240 |
TKKSSKSKSK SSSKSEKRKK LQSKAAFTYY WIAQQSDYKG GSKVAIKTCG GKTIAKVNEN | 300 |
YADALVMEGT GVVGNKIVNL GGCSCNAYKC FEEINRSEEP YGITAYGSPL RPYVTIAAND | 360 |
LPKGKKIYVP QIDGWSVPGS GKKHNGCLLV DDQSWSFSSH HIDFYVYEQD YYQKLDKQHK | 420 |
TTKVDIYDGG NCKLLNYL | 438 |
Predicted 3D structure by AlphaFold2 with pLDDT = 64.73 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MLLQRAITLA AIGILAFTGN HNTAHAEPLA IVHGTSGSDA IKISASYLAA FDNDNEPEPS | 60 |
FELVDTPDDI SSKLISLKKR GSGCADYYTV KSGDTCDKIA KKHGISTKEF MSLNSQINSK | 120 |
CTNLHVHKKY CVEEGSSSSS SSSSSSGSSS SGGCSKKHKV TNSDTCISVA KKYGLSLNEF | 180 |
YNLNSQVHRG SCDNLDTGKY YCVASGGSND KSSSKETSKK DDKKDDDDDV SKKVTNMASK | 240 |
TKKSSKSKSK SSSKSEKRKK LQSKAAFTYY WIAQQSDYKG GSKVAIKTCG GKTIAKVNEN | 300 |
YADALVMEGT GVVGNKIVNL GGCSCNAYKC FEEINRSEEP YGITAYGSPL RPYVTIAAND | 360 |
LPKGKKIYVP QIDGWSVPGS GKKHNGCLLV DDQSWSFSSH HIDFYVYEQD YYQKLDKQHK | 420 |
TTKVDIYDGG NCKLLNYL | 438 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.