CAZyme3D

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Entry ID

Information for CAZyme ID: CDS04122.1

Basic Information

GenBank IDCDS04122.1
FamilyCBM50
Sequence Length438
UniProt IDA0A077W9W9(100,100)Download
Average pLDDT?64.73
CAZy50 ID83302
CAZy50 RepYes, CDS04122.1
Structure ClusterSC_CBM50_clus39
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID688394
KingdomEukaryota
PhylumMucoromycota
ClassMucoromycetes
OrderMucorales
FamilyLichtheimiaceae
GenusLichtheimia
SpeciesLichtheimia ramosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLLQRAITLA  AIGILAFTGN  HNTAHAEPLA  IVHGTSGSDA  IKISASYLAA  FDNDNEPEPS60
FELVDTPDDI  SSKLISLKKR  GSGCADYYTV  KSGDTCDKIA  KKHGISTKEF  MSLNSQINSK120
CTNLHVHKKY  CVEEGSSSSS  SSSSSSGSSS  SGGCSKKHKV  TNSDTCISVA  KKYGLSLNEF180
YNLNSQVHRG  SCDNLDTGKY  YCVASGGSND  KSSSKETSKK  DDKKDDDDDV  SKKVTNMASK240
TKKSSKSKSK  SSSKSEKRKK  LQSKAAFTYY  WIAQQSDYKG  GSKVAIKTCG  GKTIAKVNEN300
YADALVMEGT  GVVGNKIVNL  GGCSCNAYKC  FEEINRSEEP  YGITAYGSPL  RPYVTIAAND360
LPKGKKIYVP  QIDGWSVPGS  GKKHNGCLLV  DDQSWSFSSH  HIDFYVYEQD  YYQKLDKQHK420
TTKVDIYDGG  NCKLLNYL438

Predicted 3D structure by AlphaFold2 with pLDDT = 64.73 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLLQRAITLA  AIGILAFTGN  HNTAHAEPLA  IVHGTSGSDA  IKISASYLAA  FDNDNEPEPS60
FELVDTPDDI  SSKLISLKKR  GSGCADYYTV  KSGDTCDKIA  KKHGISTKEF  MSLNSQINSK120
CTNLHVHKKY  CVEEGSSSSS  SSSSSSGSSS  SGGCSKKHKV  TNSDTCISVA  KKYGLSLNEF180
YNLNSQVHRG  SCDNLDTGKY  YCVASGGSND  KSSSKETSKK  DDKKDDDDDV  SKKVTNMASK240
TKKSSKSKSK  SSSKSEKRKK  LQSKAAFTYY  WIAQQSDYKG  GSKVAIKTCG  GKTIAKVNEN300
YADALVMEGT  GVVGNKIVNL  GGCSCNAYKC  FEEINRSEEP  YGITAYGSPL  RPYVTIAAND360
LPKGKKIYVP  QIDGWSVPGS  GKKHNGCLLV  DDQSWSFSSH  HIDFYVYEQD  YYQKLDKQHK420
TTKVDIYDGG  NCKLLNYL438

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM50(88-128)

MLLQRAITLA  AIGILAFTGN  HNTAHAEPLA  IVHGTSGSDA  IKISASYLAA  FDNDNEPEPS60
FELVDTPDDI  SSKLISLKKR  GSGCADYYTV  KSGDTCDKIA  KKHGISTKEF  MSLNSQINSK120
CTNLHVHKKY  CVEEGSSSSS  SSSSSSGSSS  SGGCSKKHKV  TNSDTCISVA  KKYGLSLNEF180
YNLNSQVHRG  SCDNLDTGKY  YCVASGGSND  KSSSKETSKK  DDKKDDDDDV  SKKVTNMASK240
TKKSSKSKSK  SSSKSEKRKK  LQSKAAFTYY  WIAQQSDYKG  GSKVAIKTCG  GKTIAKVNEN300
YADALVMEGT  GVVGNKIVNL  GGCSCNAYKC  FEEINRSEEP  YGITAYGSPL  RPYVTIAAND360
LPKGKKIYVP  QIDGWSVPGS  GKKHNGCLLV  DDQSWSFSSH  HIDFYVYEQD  YYQKLDKQHK420
TTKVDIYDGG  NCKLLNYL438

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help