CAZyme3D

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Entry ID

Information for CAZyme ID: CDS03648.1

Basic Information

GenBank IDCDS03648.1
FamilyGT2
Sequence Length1919
UniProt IDA0A077WBW5(100,100)Download
Average pLDDT?74.41
CAZy50 ID1730
CAZy50 RepYes, CDS03648.1
Structure ClusterSC_GT2_clus499
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID688394
KingdomEukaryota
PhylumMucoromycota
ClassMucoromycetes
OrderMucorales
FamilyLichtheimiaceae
GenusLichtheimia
SpeciesLichtheimia ramosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQDDSRTDLV  GLLTGPNASV  SEDTIANFLS  SRYKRNQVYT  RAGHSNLIVI  NPYQPLEAVN60
DATLQTYADV  GYRDVSENKP  MLQPHVYDLA  ARAYFHMRRT  GEDQSIVLSG  ITGSGKSTTR120
EHLVDQLTLL  STHSKKENKL  QQQIRNAGVI  LEAFGHARTT  QTRSASKFGM  FQELQFSERG180
RILGAKTLTY  AFDKARLTKV  PLNERTYHVF  YALLAGTTVD  EKNALHINFG  FDYFHYLNQS240
RCITVADRND  DIAFGDLKSA  LKVCGFKAKT  VTQIFQLLAA  ILHLGNLEFQ  DTRGGEVAEE300
TCAVKNERVL  EIVSAMLGVS  PSKLETALTY  KLRLIRNELC  TAFMNAQGAT  EQRDSLAQAL360
YHVLFLWIVE  SINTKICYND  GDPANFIGIL  DQFGFQNFKE  NGFEEFSANF  ANERIHQFLI420
YQRFNDDANL  NALMIRDNVP  LPRILTMDNA  GCLDLLVGKE  RDNASTNVAQ  KSAALGLGGV480
VGLMDRDCAR  YQTGATDATD  ANMLANLQRQ  FSGHSSFSKS  TQTYSFGINH  FSGTVHYTVD540
GFVEKNLNTL  SPDFVTLLRD  NSSNAFVATL  FSSTAMATES  HPKDGRTIVK  AQLSSKPTRA600
PSMRRRPTNK  RRGAAAAATG  APDDVDTGEA  DPSKEAEQAY  QDMQVMTVMD  QLYVTLRDLC660
TTMADTRIYN  IIHLRPNDMQ  TADMVDMKRL  KSQVRAFLLP  DLVQRSSLEY  ANHYAFAEFL720
MRYDRLVVSL  QIDGSKSERS  MVESVCAIMN  WTEQQAYIGN  DNIWLAFDVW  KELEDSLRAA780
EKEERARMKA  AMSENNNTDV  MSDAPGAMDP  HFDPHYEESN  DRLLPTGGAY  LDPQHQPAHM840
ARASVFDDNG  SYYESDYGMK  REVEGSQWGE  ESEWGMKGLS  EGFGPNMDMS  KMIEDYSAPQ900
NEQVEEMEIS  AVRVWWVRFV  WAMTWWIPSF  LLRTVGKMKR  QDVQLAWREK  FTLCLLIFIF960
SAIVIFVIVG  LSPILCPGTK  EMYSNANVQN  HNNPEDMYVS  HRGVVYDITN  FARSNHGSAS1020
LPATTDTMQT  LAGLDVSWTI  PPPLTSACEG  LVTSPSVTIQ  PNQTIELGPF  VHYSGDQLQQ1080
TSITAMKDQS  WYWNTFLPQM  KLYKKGHIVQ  DMNTIADDYK  GWTRYAMAIN  GKVYDLTDYF1140
TTADRYASGS  TAGDYSFLDD  AVEEIFKKFS  GTDGTDNWNK  YTAALSPDVL  AANMNCLNNM1200
FYIGDVDERE  SVRCTFTNYL  LLAFALVMCL  TILIKFLAAL  QFGSAPTPED  HDKFVICQVP1260
CYTEDEESLK  KTIDSLTVMN  YDDKRKLLFI  IADGMVMGGG  NDRPTPRIVL  DVLGYDTKND1320
PEPLMFKSIG  EGSKQLNYGK  VYSGLYECEG  HVVPYIVIVK  VGKASERAKP  GNRGKRDSQL1380
ICMNFLNKVH  FDGEMTPLEL  EMYHQIKNVI  GVNPSFYEYV  LMVDSDTEVD  TNALNHLIST1440
MLHDGSIIGL  CGETRLVNED  RSLTTMIQVY  EYYISHHLAK  AFESLFGSVT  CLPGCFCMYR1500
IRTPVKNEPL  INSPKVIGDY  SDNNVDTLHK  KNLLHLGEDR  YLTTLMMKHF  PQYKMKFTPH1560
AFCKTVAPDR  IRVLVSQRRR  WINSTIHNLF  ELILLPDLCG  FCCFSMRFVV  LIDLIGTLTL1620
PVSVVYLVYL  IYVIADKSQP  LPILSLAMLA  GMYGLQAILF  ILKRQWQHIG  WMIFYICAIP1680
IFSFALPIYS  FWHFDDFSWG  NTRIVVGDKK  QKKIIVNDDE  KFDDKMIPLK  KWSVYEQELW1740
EMGSTGSRET  GVTGHSYRSY  YSQGGTPMNN  MPPNMMGGAG  GAPTGTGSVI  YDGRSMYGGG1800
SVIYDGNRSM  YGGGHNGSQD  FMDGGMRPGS  RMMPPGGPGS  VMGMPGYTGS  VMGAPGYTGS1860
MMAPPMAGYT  GSMMMAPQPG  GYAGSVIGSE  YGGAGPQDHL  MAQHQQRGSF  MPHQQPPYQ1919

Predicted 3D structure by AlphaFold2 with pLDDT = 74.41 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQDDSRTDLV  GLLTGPNASV  SEDTIANFLS  SRYKRNQVYT  RAGHSNLIVI  NPYQPLEAVN60
DATLQTYADV  GYRDVSENKP  MLQPHVYDLA  ARAYFHMRRT  GEDQSIVLSG  ITGSGKSTTR120
EHLVDQLTLL  STHSKKENKL  QQQIRNAGVI  LEAFGHARTT  QTRSASKFGM  FQELQFSERG180
RILGAKTLTY  AFDKARLTKV  PLNERTYHVF  YALLAGTTVD  EKNALHINFG  FDYFHYLNQS240
RCITVADRND  DIAFGDLKSA  LKVCGFKAKT  VTQIFQLLAA  ILHLGNLEFQ  DTRGGEVAEE300
TCAVKNERVL  EIVSAMLGVS  PSKLETALTY  KLRLIRNELC  TAFMNAQGAT  EQRDSLAQAL360
YHVLFLWIVE  SINTKICYND  GDPANFIGIL  DQFGFQNFKE  NGFEEFSANF  ANERIHQFLI420
YQRFNDDANL  NALMIRDNVP  LPRILTMDNA  GCLDLLVGKE  RDNASTNVAQ  KSAALGLGGV480
VGLMDRDCAR  YQTGATDATD  ANMLANLQRQ  FSGHSSFSKS  TQTYSFGINH  FSGTVHYTVD540
GFVEKNLNTL  SPDFVTLLRD  NSSNAFVATL  FSSTAMATES  HPKDGRTIVK  AQLSSKPTRA600
PSMRRRPTNK  RRGAAAAATG  APDDVDTGEA  DPSKEAEQAY  QDMQVMTVMD  QLYVTLRDLC660
TTMADTRIYN  IIHLRPNDMQ  TADMVDMKRL  KSQVRAFLLP  DLVQRSSLEY  ANHYAFAEFL720
MRYDRLVVSL  QIDGSKSERS  MVESVCAIMN  WTEQQAYIGN  DNIWLAFDVW  KELEDSLRAA780
EKEERARMKA  AMSENNNTDV  MSDAPGAMDP  HFDPHYEESN  DRLLPTGGAY  LDPQHQPAHM840
ARASVFDDNG  SYYESDYGMK  REVEGSQWGE  ESEWGMKGLS  EGFGPNMDMS  KMIEDYSAPQ900
NEQVEEMEIS  AVRVWWVRFV  WAMTWWIPSF  LLRTVGKMKR  QDVQLAWREK  FTLCLLIFIF960
SAIVIFVIVG  LSPILCPGTK  EMYSNANVQN  HNNPEDMYVS  HRGVVYDITN  FARSNHGSAS1020
LPATTDTMQT  LAGLDVSWTI  PPPLTSACEG  LVTSPSVTIQ  PNQTIELGPF  VHYSGDQLQQ1080
TSITAMKDQS  WYWNTFLPQM  KLYKKGHIVQ  DMNTIADDYK  GWTRYAMAIN  GKVYDLTDYF1140
TTADRYASGS  TAGDYSFLDD  AVEEIFKKFS  GTDGTDNWNK  YTAALSPDVL  AANMNCLNNM1200
FYIGDVDERE  SVRCTFTNYL  LLAFALVMCL  TILIKFLAAL  QFGSAPTPED  HDKFVICQVP1260
CYTEDEESLK  KTIDSLTVMN  YDDKRKLLFI  IADGMVMGGG  NDRPTPRIVL  DVLGYDTKND1320
PEPLMFKSIG  EGSKQLNYGK  VYSGLYECEG  HVVPYIVIVK  VGKASERAKP  GNRGKRDSQL1380
ICMNFLNKVH  FDGEMTPLEL  EMYHQIKNVI  GVNPSFYEYV  LMVDSDTEVD  TNALNHLIST1440
MLHDGSIIGL  CGETRLVNED  RSLTTMIQVY  EYYISHHLAK  AFESLFGSVT  CLPGCFCMYR1500
IRTPVKNEPL  INSPKVIGDY  SDNNVDTLHK  KNLLHLGEDR  YLTTLMMKHF  PQYKMKFTPH1560
AFCKTVAPDR  IRVLVSQRRR  WINSTIHNLF  ELILLPDLCG  FCCFSMRFVV  LIDLIGTLTL1620
PVSVVYLVYL  IYVIADKSQP  LPILSLAMLA  GMYGLQAILF  ILKRQWQHIG  WMIFYICAIP1680
IFSFALPIYS  FWHFDDFSWG  NTRIVVGDKK  QKKIIVNDDE  KFDDKMIPLK  KWSVYEQELW1740
EMGSTGSRET  GVTGHSYRSY  YSQGGTPMNN  MPPNMMGGAG  GAPTGTGSVI  YDGRSMYGGG1800
SVIYDGNRSM  YGGGHNGSQD  FMDGGMRPGS  RMMPPGGPGS  VMGMPGYTGS  VMGAPGYTGS1860
MMAPPMAGYT  GSMMMAPQPG  GYAGSVIGSE  YGGAGPQDHL  MAQHQQRGSF  MPHQQPPYQ1919

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(1231-1738)

MQDDSRTDLV  GLLTGPNASV  SEDTIANFLS  SRYKRNQVYT  RAGHSNLIVI  NPYQPLEAVN60
DATLQTYADV  GYRDVSENKP  MLQPHVYDLA  ARAYFHMRRT  GEDQSIVLSG  ITGSGKSTTR120
EHLVDQLTLL  STHSKKENKL  QQQIRNAGVI  LEAFGHARTT  QTRSASKFGM  FQELQFSERG180
RILGAKTLTY  AFDKARLTKV  PLNERTYHVF  YALLAGTTVD  EKNALHINFG  FDYFHYLNQS240
RCITVADRND  DIAFGDLKSA  LKVCGFKAKT  VTQIFQLLAA  ILHLGNLEFQ  DTRGGEVAEE300
TCAVKNERVL  EIVSAMLGVS  PSKLETALTY  KLRLIRNELC  TAFMNAQGAT  EQRDSLAQAL360
YHVLFLWIVE  SINTKICYND  GDPANFIGIL  DQFGFQNFKE  NGFEEFSANF  ANERIHQFLI420
YQRFNDDANL  NALMIRDNVP  LPRILTMDNA  GCLDLLVGKE  RDNASTNVAQ  KSAALGLGGV480
VGLMDRDCAR  YQTGATDATD  ANMLANLQRQ  FSGHSSFSKS  TQTYSFGINH  FSGTVHYTVD540
GFVEKNLNTL  SPDFVTLLRD  NSSNAFVATL  FSSTAMATES  HPKDGRTIVK  AQLSSKPTRA600
PSMRRRPTNK  RRGAAAAATG  APDDVDTGEA  DPSKEAEQAY  QDMQVMTVMD  QLYVTLRDLC660
TTMADTRIYN  IIHLRPNDMQ  TADMVDMKRL  KSQVRAFLLP  DLVQRSSLEY  ANHYAFAEFL720
MRYDRLVVSL  QIDGSKSERS  MVESVCAIMN  WTEQQAYIGN  DNIWLAFDVW  KELEDSLRAA780
EKEERARMKA  AMSENNNTDV  MSDAPGAMDP  HFDPHYEESN  DRLLPTGGAY  LDPQHQPAHM840
ARASVFDDNG  SYYESDYGMK  REVEGSQWGE  ESEWGMKGLS  EGFGPNMDMS  KMIEDYSAPQ900
NEQVEEMEIS  AVRVWWVRFV  WAMTWWIPSF  LLRTVGKMKR  QDVQLAWREK  FTLCLLIFIF960
SAIVIFVIVG  LSPILCPGTK  EMYSNANVQN  HNNPEDMYVS  HRGVVYDITN  FARSNHGSAS1020
LPATTDTMQT  LAGLDVSWTI  PPPLTSACEG  LVTSPSVTIQ  PNQTIELGPF  VHYSGDQLQQ1080
TSITAMKDQS  WYWNTFLPQM  KLYKKGHIVQ  DMNTIADDYK  GWTRYAMAIN  GKVYDLTDYF1140
TTADRYASGS  TAGDYSFLDD  AVEEIFKKFS  GTDGTDNWNK  YTAALSPDVL  AANMNCLNNM1200
FYIGDVDERE  SVRCTFTNYL  LLAFALVMCL  TILIKFLAAL  QFGSAPTPED  HDKFVICQVP1260
CYTEDEESLK  KTIDSLTVMN  YDDKRKLLFI  IADGMVMGGG  NDRPTPRIVL  DVLGYDTKND1320
PEPLMFKSIG  EGSKQLNYGK  VYSGLYECEG  HVVPYIVIVK  VGKASERAKP  GNRGKRDSQL1380
ICMNFLNKVH  FDGEMTPLEL  EMYHQIKNVI  GVNPSFYEYV  LMVDSDTEVD  TNALNHLIST1440
MLHDGSIIGL  CGETRLVNED  RSLTTMIQVY  EYYISHHLAK  AFESLFGSVT  CLPGCFCMYR1500
IRTPVKNEPL  INSPKVIGDY  SDNNVDTLHK  KNLLHLGEDR  YLTTLMMKHF  PQYKMKFTPH1560
AFCKTVAPDR  IRVLVSQRRR  WINSTIHNLF  ELILLPDLCG  FCCFSMRFVV  LIDLIGTLTL1620
PVSVVYLVYL  IYVIADKSQP  LPILSLAMLA  GMYGLQAILF  ILKRQWQHIG  WMIFYICAIP1680
IFSFALPIYS  FWHFDDFSWG  NTRIVVGDKK  QKKIIVNDDE  KFDDKMIPLK  KWSVYEQELW1740
EMGSTGSRET  GVTGHSYRSY  YSQGGTPMNN  MPPNMMGGAG  GAPTGTGSVI  YDGRSMYGGG1800
SVIYDGNRSM  YGGGHNGSQD  FMDGGMRPGS  RMMPPGGPGS  VMGMPGYTGS  VMGAPGYTGS1860
MMAPPMAGYT  GSMMMAPQPG  GYAGSVIGSE  YGGAGPQDHL  MAQHQQRGSF  MPHQQPPYQ1919

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help