CAZyme3D

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Entry ID

Information for CAZyme ID: CDR49308.1

Basic Information

GenBank IDCDR49308.1
FamilyGH3
Sequence Length800
UniProt IDA0A061BH64(100,100)Download
Average pLDDT?91.35
CAZy50 ID27336
CAZy50 RepYes, CDR49308.1
Structure ClusterSC_GH3_clus210
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID5286
KingdomEukaryota
PhylumBasidiomycota
ClassMicrobotryomycetes
OrderSporidiobolales
FamilySporidiobolaceae
GenusRhodotorula
SpeciesRhodotorula toruloides

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLTRTSIALT  LAAASAVAAP  ATAPSSASSA  PTSSASSTAG  TGILTADGFT  NQKWLDAFHK60
AKEVVGGLSF  DQKINFTDLR  GFSVNTPYGG  CAGITFPLPS  AGINQGICFA  DGPTGVRQTR120
YSTQFPAEVT  AAATWDRDLI  HERALAIGKE  YAEVGAQVPL  SIVVGPMGRS  VYGGRNWEGF180
SSEPYLAGEA  VRLTVDGFQK  EGVTGLVKHF  YGNEQEYLRQ  GLADTGYIAG  PLDHIIDSII240
DQATARELYI  APFAEAVRAG  AGGIMCSYNK  LNGTAACENK  ELLIDILKEE  LAFPGFVVTD300
WYAGHTTLGA  ALNGTDYVEA  SEPSVNLFGA  KLAPAIQNGS  VPEALLDDKI  IRMLVPYFAL360
NQSSLPAVDY  DRYVASQETA  DTARKVAEEG  ITLLKNNRTS  NLGLPLCKPK  DLILVGSAAA420
PGRFGIFGNV  PIVAGTPSLI  VEGFLGDGFG  SGTSEEPYAV  DPLSAFTARG  RQEKRPVVVD480
GYYYDDPLVG  VVPNAVRSNT  SILDEKLLYA  DATMVFVNAI  GAEGYDRVNL  TLGNNGDNLI540
NYVADRHNNT  IVVITAPGPV  DMSQWIDHVN  VTAVLFTYFS  GQEGGTAMAR  VAFGDVNPSG600
KLPFTIAKNI  SDYDQKAIYH  GDYVVNPTTN  FTEGVFIDYK  WFDKQGIEPL  FEFGYGKSYT660
TFNVSGLSLY  QNKKANPPAI  RETKEKFFIN  GKQASGLYDY  VYTVKATVKN  TGSVDGAEVA720
QLYLTFPDST  PNKMPVHNLR  GFAKPFLKAG  ESQDVYFDLR  NKDLTVWSVE  KQGWVIPSGE780
FKVSVGTSSR  NLPLSKTFSY  800

Predicted 3D structure by AlphaFold2 with pLDDT = 91.35 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLTRTSIALT  LAAASAVAAP  ATAPSSASSA  PTSSASSTAG  TGILTADGFT  NQKWLDAFHK60
AKEVVGGLSF  DQKINFTDLR  GFSVNTPYGG  CAGITFPLPS  AGINQGICFA  DGPTGVRQTR120
YSTQFPAEVT  AAATWDRDLI  HERALAIGKE  YAEVGAQVPL  SIVVGPMGRS  VYGGRNWEGF180
SSEPYLAGEA  VRLTVDGFQK  EGVTGLVKHF  YGNEQEYLRQ  GLADTGYIAG  PLDHIIDSII240
DQATARELYI  APFAEAVRAG  AGGIMCSYNK  LNGTAACENK  ELLIDILKEE  LAFPGFVVTD300
WYAGHTTLGA  ALNGTDYVEA  SEPSVNLFGA  KLAPAIQNGS  VPEALLDDKI  IRMLVPYFAL360
NQSSLPAVDY  DRYVASQETA  DTARKVAEEG  ITLLKNNRTS  NLGLPLCKPK  DLILVGSAAA420
PGRFGIFGNV  PIVAGTPSLI  VEGFLGDGFG  SGTSEEPYAV  DPLSAFTARG  RQEKRPVVVD480
GYYYDDPLVG  VVPNAVRSNT  SILDEKLLYA  DATMVFVNAI  GAEGYDRVNL  TLGNNGDNLI540
NYVADRHNNT  IVVITAPGPV  DMSQWIDHVN  VTAVLFTYFS  GQEGGTAMAR  VAFGDVNPSG600
KLPFTIAKNI  SDYDQKAIYH  GDYVVNPTTN  FTEGVFIDYK  WFDKQGIEPL  FEFGYGKSYT660
TFNVSGLSLY  QNKKANPPAI  RETKEKFFIN  GKQASGLYDY  VYTVKATVKN  TGSVDGAEVA720
QLYLTFPDST  PNKMPVHNLR  GFAKPFLKAG  ESQDVYFDLR  NKDLTVWSVE  KQGWVIPSGE780
FKVSVGTSSR  NLPLSKTFSY  800

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(102-316)

MLTRTSIALT  LAAASAVAAP  ATAPSSASSA  PTSSASSTAG  TGILTADGFT  NQKWLDAFHK60
AKEVVGGLSF  DQKINFTDLR  GFSVNTPYGG  CAGITFPLPS  AGINQGICFA  DGPTGVRQTR120
YSTQFPAEVT  AAATWDRDLI  HERALAIGKE  YAEVGAQVPL  SIVVGPMGRS  VYGGRNWEGF180
SSEPYLAGEA  VRLTVDGFQK  EGVTGLVKHF  YGNEQEYLRQ  GLADTGYIAG  PLDHIIDSII240
DQATARELYI  APFAEAVRAG  AGGIMCSYNK  LNGTAACENK  ELLIDILKEE  LAFPGFVVTD300
WYAGHTTLGA  ALNGTDYVEA  SEPSVNLFGA  KLAPAIQNGS  VPEALLDDKI  IRMLVPYFAL360
NQSSLPAVDY  DRYVASQETA  DTARKVAEEG  ITLLKNNRTS  NLGLPLCKPK  DLILVGSAAA420
PGRFGIFGNV  PIVAGTPSLI  VEGFLGDGFG  SGTSEEPYAV  DPLSAFTARG  RQEKRPVVVD480
GYYYDDPLVG  VVPNAVRSNT  SILDEKLLYA  DATMVFVNAI  GAEGYDRVNL  TLGNNGDNLI540
NYVADRHNNT  IVVITAPGPV  DMSQWIDHVN  VTAVLFTYFS  GQEGGTAMAR  VAFGDVNPSG600
KLPFTIAKNI  SDYDQKAIYH  GDYVVNPTTN  FTEGVFIDYK  WFDKQGIEPL  FEFGYGKSYT660
TFNVSGLSLY  QNKKANPPAI  RETKEKFFIN  GKQASGLYDY  VYTVKATVKN  TGSVDGAEVA720
QLYLTFPDST  PNKMPVHNLR  GFAKPFLKAG  ESQDVYFDLR  NKDLTVWSVE  KQGWVIPSGE780
FKVSVGTSSR  NLPLSKTFSY  800

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help