Information for CAZyme ID: CDR49308.1
Basic Information
| GenBank ID | CDR49308.1 |
| Family | GH3 |
| Sequence Length | 800 |
| UniProt ID | A0A061BH64(100,100) |
| Average pLDDT? | 91.35 |
| CAZy50 ID | 27336 |
| CAZy50 Rep | Yes, CDR49308.1 |
| Structure Cluster | SC_GH3_clus210 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 5286 |
| Kingdom | Eukaryota |
| Phylum | Basidiomycota |
| Class | Microbotryomycetes |
| Order | Sporidiobolales |
| Family | Sporidiobolaceae |
| Genus | Rhodotorula |
| Species | Rhodotorula toruloides |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MLTRTSIALT LAAASAVAAP ATAPSSASSA PTSSASSTAG TGILTADGFT NQKWLDAFHK | 60 |
| AKEVVGGLSF DQKINFTDLR GFSVNTPYGG CAGITFPLPS AGINQGICFA DGPTGVRQTR | 120 |
| YSTQFPAEVT AAATWDRDLI HERALAIGKE YAEVGAQVPL SIVVGPMGRS VYGGRNWEGF | 180 |
| SSEPYLAGEA VRLTVDGFQK EGVTGLVKHF YGNEQEYLRQ GLADTGYIAG PLDHIIDSII | 240 |
| DQATARELYI APFAEAVRAG AGGIMCSYNK LNGTAACENK ELLIDILKEE LAFPGFVVTD | 300 |
| WYAGHTTLGA ALNGTDYVEA SEPSVNLFGA KLAPAIQNGS VPEALLDDKI IRMLVPYFAL | 360 |
| NQSSLPAVDY DRYVASQETA DTARKVAEEG ITLLKNNRTS NLGLPLCKPK DLILVGSAAA | 420 |
| PGRFGIFGNV PIVAGTPSLI VEGFLGDGFG SGTSEEPYAV DPLSAFTARG RQEKRPVVVD | 480 |
| GYYYDDPLVG VVPNAVRSNT SILDEKLLYA DATMVFVNAI GAEGYDRVNL TLGNNGDNLI | 540 |
| NYVADRHNNT IVVITAPGPV DMSQWIDHVN VTAVLFTYFS GQEGGTAMAR VAFGDVNPSG | 600 |
| KLPFTIAKNI SDYDQKAIYH GDYVVNPTTN FTEGVFIDYK WFDKQGIEPL FEFGYGKSYT | 660 |
| TFNVSGLSLY QNKKANPPAI RETKEKFFIN GKQASGLYDY VYTVKATVKN TGSVDGAEVA | 720 |
| QLYLTFPDST PNKMPVHNLR GFAKPFLKAG ESQDVYFDLR NKDLTVWSVE KQGWVIPSGE | 780 |
| FKVSVGTSSR NLPLSKTFSY | 800 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.35 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MLTRTSIALT LAAASAVAAP ATAPSSASSA PTSSASSTAG TGILTADGFT NQKWLDAFHK | 60 |
| AKEVVGGLSF DQKINFTDLR GFSVNTPYGG CAGITFPLPS AGINQGICFA DGPTGVRQTR | 120 |
| YSTQFPAEVT AAATWDRDLI HERALAIGKE YAEVGAQVPL SIVVGPMGRS VYGGRNWEGF | 180 |
| SSEPYLAGEA VRLTVDGFQK EGVTGLVKHF YGNEQEYLRQ GLADTGYIAG PLDHIIDSII | 240 |
| DQATARELYI APFAEAVRAG AGGIMCSYNK LNGTAACENK ELLIDILKEE LAFPGFVVTD | 300 |
| WYAGHTTLGA ALNGTDYVEA SEPSVNLFGA KLAPAIQNGS VPEALLDDKI IRMLVPYFAL | 360 |
| NQSSLPAVDY DRYVASQETA DTARKVAEEG ITLLKNNRTS NLGLPLCKPK DLILVGSAAA | 420 |
| PGRFGIFGNV PIVAGTPSLI VEGFLGDGFG SGTSEEPYAV DPLSAFTARG RQEKRPVVVD | 480 |
| GYYYDDPLVG VVPNAVRSNT SILDEKLLYA DATMVFVNAI GAEGYDRVNL TLGNNGDNLI | 540 |
| NYVADRHNNT IVVITAPGPV DMSQWIDHVN VTAVLFTYFS GQEGGTAMAR VAFGDVNPSG | 600 |
| KLPFTIAKNI SDYDQKAIYH GDYVVNPTTN FTEGVFIDYK WFDKQGIEPL FEFGYGKSYT | 660 |
| TFNVSGLSLY QNKKANPPAI RETKEKFFIN GKQASGLYDY VYTVKATVKN TGSVDGAEVA | 720 |
| QLYLTFPDST PNKMPVHNLR GFAKPFLKAG ESQDVYFDLR NKDLTVWSVE KQGWVIPSGE | 780 |
| FKVSVGTSSR NLPLSKTFSY | 800 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.