Information for CAZyme ID: CDR43229.1
Basic Information
| GenBank ID | CDR43229.1 |
| Family | CBM19, GH18 |
| Sequence Length | 628 |
| UniProt ID | A0A061B8K3(100,100) |
| Average pLDDT? | 71.30 |
| CAZy50 ID | 48355 |
| CAZy50 Rep | Yes, CDR43229.1 |
| Structure Cluster | SC_CBM19_clus1, SC_GH18_clus178 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 36022 |
| Kingdom | Eukaryota |
| Phylum | Ascomycota |
| Class | Saccharomycetes |
| Order | Saccharomycetales |
| Family | Phaffomycetaceae |
| Genus | Cyberlindnera |
| Species | Cyberlindnera fabianii |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MFTTSTLAQL AIAFTGFVST VSAFDASSNK NVALYWGQAS AGSQESLATY CESDAADIMI | 60 |
| LSFMTAFPGT NGVPSLNFAG ACSDTFSSGL LKCDKIAADI QTCQGLGKKV MLSLGGASGA | 120 |
| YGFSSDSEAE EFAGTLWDLF GEGSADERPF GDSVIDGFDF DIENNEDTGY AALATKLREY | 180 |
| FAKGSKSYYL SAAPQCVYPD ASVGDAMAKA EFDFAFIQFY NNYCSIGGSF NWDTWTDYAQ | 240 |
| NTSPNKDIKL YLGLPGFTSA AGSGYVDIDT IKSTLDTIGS DSNFGGVMLW DASQGFKNTV | 300 |
| NGEPFAEAIK DALNGLSGSD TTTAATTSSS SSSSSSSSST SLTTSSTNTQ ATSSAVASSA | 360 |
| VTTSVASSIA PVVSSSDASP VVSSSAVAPV VSSTAETSTS SSVDAGQTDV ATSSSSSVVP | 420 |
| PQAPSSATTT VSISQAQSTS TVAIEHTTET DLIPSTHGAA VSDVATSGAP ATSETTSAAP | 480 |
| VASPVSSSFD EVTSNTFTAA SSSTLQTVII SSSSTTSTTS SPSTPVSTGC GSLSGSDLVS | 540 |
| CLNAQYAAGQ FAGSPDTCTH GEMACSAEGQ FAICNWGSWV VQTCAAGTTC YASLADNGAD | 600 |
| AFVSCNFENN SKMMHKRGTE HGHHDHNA | 628 |
Predicted 3D structure by AlphaFold2 with pLDDT = 71.30 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MFTTSTLAQL AIAFTGFVST VSAFDASSNK NVALYWGQAS AGSQESLATY CESDAADIMI | 60 |
| LSFMTAFPGT NGVPSLNFAG ACSDTFSSGL LKCDKIAADI QTCQGLGKKV MLSLGGASGA | 120 |
| YGFSSDSEAE EFAGTLWDLF GEGSADERPF GDSVIDGFDF DIENNEDTGY AALATKLREY | 180 |
| FAKGSKSYYL SAAPQCVYPD ASVGDAMAKA EFDFAFIQFY NNYCSIGGSF NWDTWTDYAQ | 240 |
| NTSPNKDIKL YLGLPGFTSA AGSGYVDIDT IKSTLDTIGS DSNFGGVMLW DASQGFKNTV | 300 |
| NGEPFAEAIK DALNGLSGSD TTTAATTSSS SSSSSSSSST SLTTSSTNTQ ATSSAVASSA | 360 |
| VTTSVASSIA PVVSSSDASP VVSSSAVAPV VSSTAETSTS SSVDAGQTDV ATSSSSSVVP | 420 |
| PQAPSSATTT VSISQAQSTS TVAIEHTTET DLIPSTHGAA VSDVATSGAP ATSETTSAAP | 480 |
| VASPVSSSFD EVTSNTFTAA SSSTLQTVII SSSSTTSTTS SPSTPVSTGC GSLSGSDLVS | 540 |
| CLNAQYAAGQ FAGSPDTCTH GEMACSAEGQ FAICNWGSWV VQTCAAGTTC YASLADNGAD | 600 |
| AFVSCNFENN SKMMHKRGTE HGHHDHNA | 628 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.