CAZyme3D

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Entry ID

Information for CAZyme ID: CDP29078.1

Basic Information

GenBank IDCDP29078.1
FamilyCBM50
Sequence Length219
UniProt IDB2AEY5(100,100)Download
Average pLDDT?76.99
CAZy50 ID177694
CAZy50 RepYes, CDP29078.1
Structure ClusterSC_CBM50_clus715
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID515849
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderSordariales
FamilyPodosporaceae
GenusPodospora
SpeciesPodospora anserina

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPGHASNCNR  WDKVRSGDQC  DTLAGRNGVS  VAQLRSRNTQ  INAQCNNLWL  DYYVCVGIPG60
VTPSPTTSTP  TSDPTPTVSP  VMPGYASNCN  RWYKVRSGDQ  CDTIASRNGI  TIAQIRTWNS120
QVNAGKLSLL  PYICLRCTNL  WLDYYICIGV  PVTAPSPLMP  GTAGTCNRWH  LVASGDQCDN180
IASRNGITVA  QFRSWNTQVN  AGKSTHLSRR  RQTPTPVLT219

Predicted 3D structure by AlphaFold2 with pLDDT = 76.99 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPGHASNCNR  WDKVRSGDQC  DTLAGRNGVS  VAQLRSRNTQ  INAQCNNLWL  DYYVCVGIPG60
VTPSPTTSTP  TSDPTPTVSP  VMPGYASNCN  RWYKVRSGDQ  CDTIASRNGI  TIAQIRTWNS120
QVNAGKLSLL  PYICLRCTNL  WLDYYICIGV  PVTAPSPLMP  GTAGTCNRWH  LVASGDQCDN180
IASRNGITVA  QFRSWNTQVN  AGKSTHLSRR  RQTPTPVLT219

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM50(93-123)+CBM50(170-199)

MPGHASNCNR  WDKVRSGDQC  DTLAGRNGVS  VAQLRSRNTQ  INAQCNNLWL  DYYVCVGIPG60
VTPSPTTSTP  TSDPTPTVSP  VMPGYASNCN  RWYKVRSGDQ  CDTIASRNGI  TIAQIRTWNS120
QVNAGKLSLL  PYICLRCTNL  WLDYYICIGV  PVTAPSPLMP  GTAGTCNRWH  LVASGDQCDN180
IASRNGITVA  QFRSWNTQVN  AGKSTHLSRR  RQTPTPVLT219

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help