CAZyme3D

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Entry ID

Information for CAZyme ID: CDM97067.1

Basic Information

GenBank IDCDM97067.1
FamilyGT2
Sequence Length1606
UniProt IDA0A9P1KJA0(100,100)Download
Average pLDDT?85.64
CAZy50 ID3151
CAZy50 RepYes, CDM97067.1
Structure ClusterSC_GT2_clus704
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID376219
KingdomBacteria
PhylumCyanobacteriota
ClassCyanophyceae
OrderOscillatoriales
FamilySirenicapillariaceae
GenusLimnospira
SpeciesLimnospira indica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSPSELSQTM  QAKEILQKSV  QFLQQQAEAY  LQQGQVDDAR  KACEQLLKIQ  PTSAVGLKIL60
GDVSLRGGDL  EGAKQNYTKA  LELQPNWAEV  YANLGSLYAR  SQQWEQAQAA  YQKAISIKPE120
FAGAYRNLAK  VWTQLNRPLD  AIRTQYKAYT  LEPHTVSAQE  HLALGDGLMQ  QGMATEAQAC180
YQNAINLNPN  LAAAYQNLGE  ALKQQGKLQE  AATYFRKAIE  LNNQTPAVSN  PVDTLEAAVS240
TPQDTLAAAT  AARQVPQPDV  LVVGQSAQAP  IEKGMGVPIS  RPVNPETVLQ  EAKAFCAIKK300
WEQAVSACQK  ALRLDPNLAE  AYKIQGNALQ  VLGEMEAAVR  SYHKALEVKP  QFPEVHANLG360
SLYAQEDRLE  KAVTFYQQAI  AQNPNFAGVY  RNLAKVLERL  GREGEASICL  EKAYTLEPNK420
ATPEDHVRLG  NTRLAQGKLD  QAYESYQRAL  ELNKQLAPAY  YGIGKVKAYG  QAWSEAEAAY480
RQAIELDPKS  GVFYQGLAEC  LAGKQDFDGA  IALYGQLLQL  NPNWAAGYYQ  IGELRNQQWN540
LSEAEAAYRK  ALELDKNLAA  AYYGLGRVLL  RQERWADVVP  VLRQAMALDA  SGADFELCKG600
FADALVQTGQ  LDEAIAFYQK  ATDLAADNAE  VWQKLGDLWR  DKQAFDQAIE  AYQKANQLDA660
NLFWSHNGLA  DVLFKLERWS  EAVEAYQKAI  AIKSDYSWSY  NSLAEALVKL  ERWSEAATAY720
REAARLNPEF  PWSSYNLGEV  SVRLQNWEEA  VKGYRAAIAV  QSDLPGIQQK  LADALRERAK780
GDLDEALGCY  LQVMEQEPDN  VDTYHKAIEI  KPDDSELYVK  LADTLARQTQ  LDGAIVFYQM840
AQDLDPDNRA  IASRLQQVIE  KKNEGVDLFI  PQETFGETPI  LPTQKKSRPS  EQPILPTQKK900
SRPSEQRFPI  DQESYEQWLR  ENLPRPADLR  QMSQAVNYLG  YKPLISVIMP  VYNTPEKFLK960
KAIESVTSQV  YPNWELCIAD  DNSSEPWIKP  LLEEYARKDN  RIKVAFRTAN  GHICAASNSA1020
LELAIGEYIA  LLDHDDVITP  EALYEVALVL  NENPDADMIY  SDEDKLDQYG  QRVFPYFKPD1080
WCPDSFLARM  YTCHLGVYRR  ELVNQVGNFR  IGYEGSQDYD  LVLRVTEKTN  KIFHIPKILY1140
SWRQHSGSTA  YDPNSKLYAY  IAAEKALNES  FARCGEKAQI  VSDHENFPGQ  YTVRYHIEEH1200
KLVSIIIPTR  NLGTTLNHCL  QSIFEKSTYP  NYEVVVIDNG  SDEQETFDII  NAWKQKEPQR1260
FSCYEFDVPF  NYPQINNYGV  TKARGDYLLF  LNNDTEVLTP  DWIEAMVEQA  QRSSIGAVGA1320
LLLYPDDTIQ  HAGVVLGIGG  VAGHSHKGYQ  AHHLGYYNQL  VTVNNYSAVT  GACLMCRRET1380
FEEVGGLDEE  LEVAFNDVDF  CLKLVSRGYR  NIYLPHVVLY  HYESKSRGYE  DTPEKEERFK1440
RESKIMKQRW  RDVLKNDPCY  NPNLSRIRQD  YGIRLSNDDN  QVVAISMSED  KEALLGCAID1500
SPKLHHPFNE  ENMLIQGWVI  GKHSPAKLIK  FICGDRVIGE  SKMNQERDDV  AKVFPDVPHA1560
IDSGFVKTID  VSETPSEVEI  LILATMEDGN  EIPVSTLHLR  HGSSDD1606

Predicted 3D structure by AlphaFold2 with pLDDT = 85.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSPSELSQTM  QAKEILQKSV  QFLQQQAEAY  LQQGQVDDAR  KACEQLLKIQ  PTSAVGLKIL60
GDVSLRGGDL  EGAKQNYTKA  LELQPNWAEV  YANLGSLYAR  SQQWEQAQAA  YQKAISIKPE120
FAGAYRNLAK  VWTQLNRPLD  AIRTQYKAYT  LEPHTVSAQE  HLALGDGLMQ  QGMATEAQAC180
YQNAINLNPN  LAAAYQNLGE  ALKQQGKLQE  AATYFRKAIE  LNNQTPAVSN  PVDTLEAAVS240
TPQDTLAAAT  AARQVPQPDV  LVVGQSAQAP  IEKGMGVPIS  RPVNPETVLQ  EAKAFCAIKK300
WEQAVSACQK  ALRLDPNLAE  AYKIQGNALQ  VLGEMEAAVR  SYHKALEVKP  QFPEVHANLG360
SLYAQEDRLE  KAVTFYQQAI  AQNPNFAGVY  RNLAKVLERL  GREGEASICL  EKAYTLEPNK420
ATPEDHVRLG  NTRLAQGKLD  QAYESYQRAL  ELNKQLAPAY  YGIGKVKAYG  QAWSEAEAAY480
RQAIELDPKS  GVFYQGLAEC  LAGKQDFDGA  IALYGQLLQL  NPNWAAGYYQ  IGELRNQQWN540
LSEAEAAYRK  ALELDKNLAA  AYYGLGRVLL  RQERWADVVP  VLRQAMALDA  SGADFELCKG600
FADALVQTGQ  LDEAIAFYQK  ATDLAADNAE  VWQKLGDLWR  DKQAFDQAIE  AYQKANQLDA660
NLFWSHNGLA  DVLFKLERWS  EAVEAYQKAI  AIKSDYSWSY  NSLAEALVKL  ERWSEAATAY720
REAARLNPEF  PWSSYNLGEV  SVRLQNWEEA  VKGYRAAIAV  QSDLPGIQQK  LADALRERAK780
GDLDEALGCY  LQVMEQEPDN  VDTYHKAIEI  KPDDSELYVK  LADTLARQTQ  LDGAIVFYQM840
AQDLDPDNRA  IASRLQQVIE  KKNEGVDLFI  PQETFGETPI  LPTQKKSRPS  EQPILPTQKK900
SRPSEQRFPI  DQESYEQWLR  ENLPRPADLR  QMSQAVNYLG  YKPLISVIMP  VYNTPEKFLK960
KAIESVTSQV  YPNWELCIAD  DNSSEPWIKP  LLEEYARKDN  RIKVAFRTAN  GHICAASNSA1020
LELAIGEYIA  LLDHDDVITP  EALYEVALVL  NENPDADMIY  SDEDKLDQYG  QRVFPYFKPD1080
WCPDSFLARM  YTCHLGVYRR  ELVNQVGNFR  IGYEGSQDYD  LVLRVTEKTN  KIFHIPKILY1140
SWRQHSGSTA  YDPNSKLYAY  IAAEKALNES  FARCGEKAQI  VSDHENFPGQ  YTVRYHIEEH1200
KLVSIIIPTR  NLGTTLNHCL  QSIFEKSTYP  NYEVVVIDNG  SDEQETFDII  NAWKQKEPQR1260
FSCYEFDVPF  NYPQINNYGV  TKARGDYLLF  LNNDTEVLTP  DWIEAMVEQA  QRSSIGAVGA1320
LLLYPDDTIQ  HAGVVLGIGG  VAGHSHKGYQ  AHHLGYYNQL  VTVNNYSAVT  GACLMCRRET1380
FEEVGGLDEE  LEVAFNDVDF  CLKLVSRGYR  NIYLPHVVLY  HYESKSRGYE  DTPEKEERFK1440
RESKIMKQRW  RDVLKNDPCY  NPNLSRIRQD  YGIRLSNDDN  QVVAISMSED  KEALLGCAID1500
SPKLHHPFNE  ENMLIQGWVI  GKHSPAKLIK  FICGDRVIGE  SKMNQERDDV  AKVFPDVPHA1560
IDSGFVKTID  VSETPSEVEI  LILATMEDGN  EIPVSTLHLR  HGSSDD1606

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(946-1106)+GT2(1204-1385)

MSPSELSQTM  QAKEILQKSV  QFLQQQAEAY  LQQGQVDDAR  KACEQLLKIQ  PTSAVGLKIL60
GDVSLRGGDL  EGAKQNYTKA  LELQPNWAEV  YANLGSLYAR  SQQWEQAQAA  YQKAISIKPE120
FAGAYRNLAK  VWTQLNRPLD  AIRTQYKAYT  LEPHTVSAQE  HLALGDGLMQ  QGMATEAQAC180
YQNAINLNPN  LAAAYQNLGE  ALKQQGKLQE  AATYFRKAIE  LNNQTPAVSN  PVDTLEAAVS240
TPQDTLAAAT  AARQVPQPDV  LVVGQSAQAP  IEKGMGVPIS  RPVNPETVLQ  EAKAFCAIKK300
WEQAVSACQK  ALRLDPNLAE  AYKIQGNALQ  VLGEMEAAVR  SYHKALEVKP  QFPEVHANLG360
SLYAQEDRLE  KAVTFYQQAI  AQNPNFAGVY  RNLAKVLERL  GREGEASICL  EKAYTLEPNK420
ATPEDHVRLG  NTRLAQGKLD  QAYESYQRAL  ELNKQLAPAY  YGIGKVKAYG  QAWSEAEAAY480
RQAIELDPKS  GVFYQGLAEC  LAGKQDFDGA  IALYGQLLQL  NPNWAAGYYQ  IGELRNQQWN540
LSEAEAAYRK  ALELDKNLAA  AYYGLGRVLL  RQERWADVVP  VLRQAMALDA  SGADFELCKG600
FADALVQTGQ  LDEAIAFYQK  ATDLAADNAE  VWQKLGDLWR  DKQAFDQAIE  AYQKANQLDA660
NLFWSHNGLA  DVLFKLERWS  EAVEAYQKAI  AIKSDYSWSY  NSLAEALVKL  ERWSEAATAY720
REAARLNPEF  PWSSYNLGEV  SVRLQNWEEA  VKGYRAAIAV  QSDLPGIQQK  LADALRERAK780
GDLDEALGCY  LQVMEQEPDN  VDTYHKAIEI  KPDDSELYVK  LADTLARQTQ  LDGAIVFYQM840
AQDLDPDNRA  IASRLQQVIE  KKNEGVDLFI  PQETFGETPI  LPTQKKSRPS  EQPILPTQKK900
SRPSEQRFPI  DQESYEQWLR  ENLPRPADLR  QMSQAVNYLG  YKPLISVIMP  VYNTPEKFLK960
KAIESVTSQV  YPNWELCIAD  DNSSEPWIKP  LLEEYARKDN  RIKVAFRTAN  GHICAASNSA1020
LELAIGEYIA  LLDHDDVITP  EALYEVALVL  NENPDADMIY  SDEDKLDQYG  QRVFPYFKPD1080
WCPDSFLARM  YTCHLGVYRR  ELVNQVGNFR  IGYEGSQDYD  LVLRVTEKTN  KIFHIPKILY1140
SWRQHSGSTA  YDPNSKLYAY  IAAEKALNES  FARCGEKAQI  VSDHENFPGQ  YTVRYHIEEH1200
KLVSIIIPTR  NLGTTLNHCL  QSIFEKSTYP  NYEVVVIDNG  SDEQETFDII  NAWKQKEPQR1260
FSCYEFDVPF  NYPQINNYGV  TKARGDYLLF  LNNDTEVLTP  DWIEAMVEQA  QRSSIGAVGA1320
LLLYPDDTIQ  HAGVVLGIGG  VAGHSHKGYQ  AHHLGYYNQL  VTVNNYSAVT  GACLMCRRET1380
FEEVGGLDEE  LEVAFNDVDF  CLKLVSRGYR  NIYLPHVVLY  HYESKSRGYE  DTPEKEERFK1440
RESKIMKQRW  RDVLKNDPCY  NPNLSRIRQD  YGIRLSNDDN  QVVAISMSED  KEALLGCAID1500
SPKLHHPFNE  ENMLIQGWVI  GKHSPAKLIK  FICGDRVIGE  SKMNQERDDV  AKVFPDVPHA1560
IDSGFVKTID  VSETPSEVEI  LILATMEDGN  EIPVSTLHLR  HGSSDD1606

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help