Basic information |
Taxonomy |
Protein Sequence |
Structure visualization |
Binding Residues |
dbCAN domains |
Homology within Cluster
Information for CAZyme ID: CDM97067.1
Basic Information
| GenBank ID | CDM97067.1 |
| Family | GT2 |
| Sequence Length | 1606 |
| UniProt ID | A0A9P1KJA0(100,100) |
| Average pLDDT? | 85.64 |
| CAZy50 ID | 3151 |
| CAZy50 Rep | Yes, CDM97067.1 |
| Structure Cluster | SC_GT2_clus704 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 376219 |
| Kingdom | Bacteria |
| Phylum | Cyanobacteriota |
| Class | Cyanophyceae |
| Order | Oscillatoriales |
| Family | Sirenicapillariaceae |
| Genus | Limnospira |
| Species | Limnospira indica |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MSPSELSQTM QAKEILQKSV QFLQQQAEAY LQQGQVDDAR KACEQLLKIQ PTSAVGLKIL | 60 |
| GDVSLRGGDL EGAKQNYTKA LELQPNWAEV YANLGSLYAR SQQWEQAQAA YQKAISIKPE | 120 |
| FAGAYRNLAK VWTQLNRPLD AIRTQYKAYT LEPHTVSAQE HLALGDGLMQ QGMATEAQAC | 180 |
| YQNAINLNPN LAAAYQNLGE ALKQQGKLQE AATYFRKAIE LNNQTPAVSN PVDTLEAAVS | 240 |
| TPQDTLAAAT AARQVPQPDV LVVGQSAQAP IEKGMGVPIS RPVNPETVLQ EAKAFCAIKK | 300 |
| WEQAVSACQK ALRLDPNLAE AYKIQGNALQ VLGEMEAAVR SYHKALEVKP QFPEVHANLG | 360 |
| SLYAQEDRLE KAVTFYQQAI AQNPNFAGVY RNLAKVLERL GREGEASICL EKAYTLEPNK | 420 |
| ATPEDHVRLG NTRLAQGKLD QAYESYQRAL ELNKQLAPAY YGIGKVKAYG QAWSEAEAAY | 480 |
| RQAIELDPKS GVFYQGLAEC LAGKQDFDGA IALYGQLLQL NPNWAAGYYQ IGELRNQQWN | 540 |
| LSEAEAAYRK ALELDKNLAA AYYGLGRVLL RQERWADVVP VLRQAMALDA SGADFELCKG | 600 |
| FADALVQTGQ LDEAIAFYQK ATDLAADNAE VWQKLGDLWR DKQAFDQAIE AYQKANQLDA | 660 |
| NLFWSHNGLA DVLFKLERWS EAVEAYQKAI AIKSDYSWSY NSLAEALVKL ERWSEAATAY | 720 |
| REAARLNPEF PWSSYNLGEV SVRLQNWEEA VKGYRAAIAV QSDLPGIQQK LADALRERAK | 780 |
| GDLDEALGCY LQVMEQEPDN VDTYHKAIEI KPDDSELYVK LADTLARQTQ LDGAIVFYQM | 840 |
| AQDLDPDNRA IASRLQQVIE KKNEGVDLFI PQETFGETPI LPTQKKSRPS EQPILPTQKK | 900 |
| SRPSEQRFPI DQESYEQWLR ENLPRPADLR QMSQAVNYLG YKPLISVIMP VYNTPEKFLK | 960 |
| KAIESVTSQV YPNWELCIAD DNSSEPWIKP LLEEYARKDN RIKVAFRTAN GHICAASNSA | 1020 |
| LELAIGEYIA LLDHDDVITP EALYEVALVL NENPDADMIY SDEDKLDQYG QRVFPYFKPD | 1080 |
| WCPDSFLARM YTCHLGVYRR ELVNQVGNFR IGYEGSQDYD LVLRVTEKTN KIFHIPKILY | 1140 |
| SWRQHSGSTA YDPNSKLYAY IAAEKALNES FARCGEKAQI VSDHENFPGQ YTVRYHIEEH | 1200 |
| KLVSIIIPTR NLGTTLNHCL QSIFEKSTYP NYEVVVIDNG SDEQETFDII NAWKQKEPQR | 1260 |
| FSCYEFDVPF NYPQINNYGV TKARGDYLLF LNNDTEVLTP DWIEAMVEQA QRSSIGAVGA | 1320 |
| LLLYPDDTIQ HAGVVLGIGG VAGHSHKGYQ AHHLGYYNQL VTVNNYSAVT GACLMCRRET | 1380 |
| FEEVGGLDEE LEVAFNDVDF CLKLVSRGYR NIYLPHVVLY HYESKSRGYE DTPEKEERFK | 1440 |
| RESKIMKQRW RDVLKNDPCY NPNLSRIRQD YGIRLSNDDN QVVAISMSED KEALLGCAID | 1500 |
| SPKLHHPFNE ENMLIQGWVI GKHSPAKLIK FICGDRVIGE SKMNQERDDV AKVFPDVPHA | 1560 |
| IDSGFVKTID VSETPSEVEI LILATMEDGN EIPVSTLHLR HGSSDD | 1606 |
Predicted 3D structure by AlphaFold2 with pLDDT = 85.64 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MSPSELSQTM QAKEILQKSV QFLQQQAEAY LQQGQVDDAR KACEQLLKIQ PTSAVGLKIL | 60 |
| GDVSLRGGDL EGAKQNYTKA LELQPNWAEV YANLGSLYAR SQQWEQAQAA YQKAISIKPE | 120 |
| FAGAYRNLAK VWTQLNRPLD AIRTQYKAYT LEPHTVSAQE HLALGDGLMQ QGMATEAQAC | 180 |
| YQNAINLNPN LAAAYQNLGE ALKQQGKLQE AATYFRKAIE LNNQTPAVSN PVDTLEAAVS | 240 |
| TPQDTLAAAT AARQVPQPDV LVVGQSAQAP IEKGMGVPIS RPVNPETVLQ EAKAFCAIKK | 300 |
| WEQAVSACQK ALRLDPNLAE AYKIQGNALQ VLGEMEAAVR SYHKALEVKP QFPEVHANLG | 360 |
| SLYAQEDRLE KAVTFYQQAI AQNPNFAGVY RNLAKVLERL GREGEASICL EKAYTLEPNK | 420 |
| ATPEDHVRLG NTRLAQGKLD QAYESYQRAL ELNKQLAPAY YGIGKVKAYG QAWSEAEAAY | 480 |
| RQAIELDPKS GVFYQGLAEC LAGKQDFDGA IALYGQLLQL NPNWAAGYYQ IGELRNQQWN | 540 |
| LSEAEAAYRK ALELDKNLAA AYYGLGRVLL RQERWADVVP VLRQAMALDA SGADFELCKG | 600 |
| FADALVQTGQ LDEAIAFYQK ATDLAADNAE VWQKLGDLWR DKQAFDQAIE AYQKANQLDA | 660 |
| NLFWSHNGLA DVLFKLERWS EAVEAYQKAI AIKSDYSWSY NSLAEALVKL ERWSEAATAY | 720 |
| REAARLNPEF PWSSYNLGEV SVRLQNWEEA VKGYRAAIAV QSDLPGIQQK LADALRERAK | 780 |
| GDLDEALGCY LQVMEQEPDN VDTYHKAIEI KPDDSELYVK LADTLARQTQ LDGAIVFYQM | 840 |
| AQDLDPDNRA IASRLQQVIE KKNEGVDLFI PQETFGETPI LPTQKKSRPS EQPILPTQKK | 900 |
| SRPSEQRFPI DQESYEQWLR ENLPRPADLR QMSQAVNYLG YKPLISVIMP VYNTPEKFLK | 960 |
| KAIESVTSQV YPNWELCIAD DNSSEPWIKP LLEEYARKDN RIKVAFRTAN GHICAASNSA | 1020 |
| LELAIGEYIA LLDHDDVITP EALYEVALVL NENPDADMIY SDEDKLDQYG QRVFPYFKPD | 1080 |
| WCPDSFLARM YTCHLGVYRR ELVNQVGNFR IGYEGSQDYD LVLRVTEKTN KIFHIPKILY | 1140 |
| SWRQHSGSTA YDPNSKLYAY IAAEKALNES FARCGEKAQI VSDHENFPGQ YTVRYHIEEH | 1200 |
| KLVSIIIPTR NLGTTLNHCL QSIFEKSTYP NYEVVVIDNG SDEQETFDII NAWKQKEPQR | 1260 |
| FSCYEFDVPF NYPQINNYGV TKARGDYLLF LNNDTEVLTP DWIEAMVEQA QRSSIGAVGA | 1320 |
| LLLYPDDTIQ HAGVVLGIGG VAGHSHKGYQ AHHLGYYNQL VTVNNYSAVT GACLMCRRET | 1380 |
| FEEVGGLDEE LEVAFNDVDF CLKLVSRGYR NIYLPHVVLY HYESKSRGYE DTPEKEERFK | 1440 |
| RESKIMKQRW RDVLKNDPCY NPNLSRIRQD YGIRLSNDDN QVVAISMSED KEALLGCAID | 1500 |
| SPKLHHPFNE ENMLIQGWVI GKHSPAKLIK FICGDRVIGE SKMNQERDDV AKVFPDVPHA | 1560 |
| IDSGFVKTID VSETPSEVEI LILATMEDGN EIPVSTLHLR HGSSDD | 1606 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.