Information for CAZyme ID: CDM97067.1
Basic Information
GenBank ID | CDM97067.1 |
Family | GT2 |
Sequence Length | 1606 |
UniProt ID | A0A9P1KJA0(100,100)![]() |
Average pLDDT? | 85.64 |
CAZy50 ID | 3151 |
CAZy50 Rep | Yes, CDM97067.1 |
Structure Cluster | SC_GT2_clus704 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 376219 |
Kingdom | Bacteria |
Phylum | Cyanobacteriota |
Class | Cyanophyceae |
Order | Oscillatoriales |
Family | Sirenicapillariaceae |
Genus | Limnospira |
Species | Limnospira indica |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MSPSELSQTM QAKEILQKSV QFLQQQAEAY LQQGQVDDAR KACEQLLKIQ PTSAVGLKIL | 60 |
GDVSLRGGDL EGAKQNYTKA LELQPNWAEV YANLGSLYAR SQQWEQAQAA YQKAISIKPE | 120 |
FAGAYRNLAK VWTQLNRPLD AIRTQYKAYT LEPHTVSAQE HLALGDGLMQ QGMATEAQAC | 180 |
YQNAINLNPN LAAAYQNLGE ALKQQGKLQE AATYFRKAIE LNNQTPAVSN PVDTLEAAVS | 240 |
TPQDTLAAAT AARQVPQPDV LVVGQSAQAP IEKGMGVPIS RPVNPETVLQ EAKAFCAIKK | 300 |
WEQAVSACQK ALRLDPNLAE AYKIQGNALQ VLGEMEAAVR SYHKALEVKP QFPEVHANLG | 360 |
SLYAQEDRLE KAVTFYQQAI AQNPNFAGVY RNLAKVLERL GREGEASICL EKAYTLEPNK | 420 |
ATPEDHVRLG NTRLAQGKLD QAYESYQRAL ELNKQLAPAY YGIGKVKAYG QAWSEAEAAY | 480 |
RQAIELDPKS GVFYQGLAEC LAGKQDFDGA IALYGQLLQL NPNWAAGYYQ IGELRNQQWN | 540 |
LSEAEAAYRK ALELDKNLAA AYYGLGRVLL RQERWADVVP VLRQAMALDA SGADFELCKG | 600 |
FADALVQTGQ LDEAIAFYQK ATDLAADNAE VWQKLGDLWR DKQAFDQAIE AYQKANQLDA | 660 |
NLFWSHNGLA DVLFKLERWS EAVEAYQKAI AIKSDYSWSY NSLAEALVKL ERWSEAATAY | 720 |
REAARLNPEF PWSSYNLGEV SVRLQNWEEA VKGYRAAIAV QSDLPGIQQK LADALRERAK | 780 |
GDLDEALGCY LQVMEQEPDN VDTYHKAIEI KPDDSELYVK LADTLARQTQ LDGAIVFYQM | 840 |
AQDLDPDNRA IASRLQQVIE KKNEGVDLFI PQETFGETPI LPTQKKSRPS EQPILPTQKK | 900 |
SRPSEQRFPI DQESYEQWLR ENLPRPADLR QMSQAVNYLG YKPLISVIMP VYNTPEKFLK | 960 |
KAIESVTSQV YPNWELCIAD DNSSEPWIKP LLEEYARKDN RIKVAFRTAN GHICAASNSA | 1020 |
LELAIGEYIA LLDHDDVITP EALYEVALVL NENPDADMIY SDEDKLDQYG QRVFPYFKPD | 1080 |
WCPDSFLARM YTCHLGVYRR ELVNQVGNFR IGYEGSQDYD LVLRVTEKTN KIFHIPKILY | 1140 |
SWRQHSGSTA YDPNSKLYAY IAAEKALNES FARCGEKAQI VSDHENFPGQ YTVRYHIEEH | 1200 |
KLVSIIIPTR NLGTTLNHCL QSIFEKSTYP NYEVVVIDNG SDEQETFDII NAWKQKEPQR | 1260 |
FSCYEFDVPF NYPQINNYGV TKARGDYLLF LNNDTEVLTP DWIEAMVEQA QRSSIGAVGA | 1320 |
LLLYPDDTIQ HAGVVLGIGG VAGHSHKGYQ AHHLGYYNQL VTVNNYSAVT GACLMCRRET | 1380 |
FEEVGGLDEE LEVAFNDVDF CLKLVSRGYR NIYLPHVVLY HYESKSRGYE DTPEKEERFK | 1440 |
RESKIMKQRW RDVLKNDPCY NPNLSRIRQD YGIRLSNDDN QVVAISMSED KEALLGCAID | 1500 |
SPKLHHPFNE ENMLIQGWVI GKHSPAKLIK FICGDRVIGE SKMNQERDDV AKVFPDVPHA | 1560 |
IDSGFVKTID VSETPSEVEI LILATMEDGN EIPVSTLHLR HGSSDD | 1606 |
Predicted 3D structure by AlphaFold2 with pLDDT = 85.64 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MSPSELSQTM QAKEILQKSV QFLQQQAEAY LQQGQVDDAR KACEQLLKIQ PTSAVGLKIL | 60 |
GDVSLRGGDL EGAKQNYTKA LELQPNWAEV YANLGSLYAR SQQWEQAQAA YQKAISIKPE | 120 |
FAGAYRNLAK VWTQLNRPLD AIRTQYKAYT LEPHTVSAQE HLALGDGLMQ QGMATEAQAC | 180 |
YQNAINLNPN LAAAYQNLGE ALKQQGKLQE AATYFRKAIE LNNQTPAVSN PVDTLEAAVS | 240 |
TPQDTLAAAT AARQVPQPDV LVVGQSAQAP IEKGMGVPIS RPVNPETVLQ EAKAFCAIKK | 300 |
WEQAVSACQK ALRLDPNLAE AYKIQGNALQ VLGEMEAAVR SYHKALEVKP QFPEVHANLG | 360 |
SLYAQEDRLE KAVTFYQQAI AQNPNFAGVY RNLAKVLERL GREGEASICL EKAYTLEPNK | 420 |
ATPEDHVRLG NTRLAQGKLD QAYESYQRAL ELNKQLAPAY YGIGKVKAYG QAWSEAEAAY | 480 |
RQAIELDPKS GVFYQGLAEC LAGKQDFDGA IALYGQLLQL NPNWAAGYYQ IGELRNQQWN | 540 |
LSEAEAAYRK ALELDKNLAA AYYGLGRVLL RQERWADVVP VLRQAMALDA SGADFELCKG | 600 |
FADALVQTGQ LDEAIAFYQK ATDLAADNAE VWQKLGDLWR DKQAFDQAIE AYQKANQLDA | 660 |
NLFWSHNGLA DVLFKLERWS EAVEAYQKAI AIKSDYSWSY NSLAEALVKL ERWSEAATAY | 720 |
REAARLNPEF PWSSYNLGEV SVRLQNWEEA VKGYRAAIAV QSDLPGIQQK LADALRERAK | 780 |
GDLDEALGCY LQVMEQEPDN VDTYHKAIEI KPDDSELYVK LADTLARQTQ LDGAIVFYQM | 840 |
AQDLDPDNRA IASRLQQVIE KKNEGVDLFI PQETFGETPI LPTQKKSRPS EQPILPTQKK | 900 |
SRPSEQRFPI DQESYEQWLR ENLPRPADLR QMSQAVNYLG YKPLISVIMP VYNTPEKFLK | 960 |
KAIESVTSQV YPNWELCIAD DNSSEPWIKP LLEEYARKDN RIKVAFRTAN GHICAASNSA | 1020 |
LELAIGEYIA LLDHDDVITP EALYEVALVL NENPDADMIY SDEDKLDQYG QRVFPYFKPD | 1080 |
WCPDSFLARM YTCHLGVYRR ELVNQVGNFR IGYEGSQDYD LVLRVTEKTN KIFHIPKILY | 1140 |
SWRQHSGSTA YDPNSKLYAY IAAEKALNES FARCGEKAQI VSDHENFPGQ YTVRYHIEEH | 1200 |
KLVSIIIPTR NLGTTLNHCL QSIFEKSTYP NYEVVVIDNG SDEQETFDII NAWKQKEPQR | 1260 |
FSCYEFDVPF NYPQINNYGV TKARGDYLLF LNNDTEVLTP DWIEAMVEQA QRSSIGAVGA | 1320 |
LLLYPDDTIQ HAGVVLGIGG VAGHSHKGYQ AHHLGYYNQL VTVNNYSAVT GACLMCRRET | 1380 |
FEEVGGLDEE LEVAFNDVDF CLKLVSRGYR NIYLPHVVLY HYESKSRGYE DTPEKEERFK | 1440 |
RESKIMKQRW RDVLKNDPCY NPNLSRIRQD YGIRLSNDDN QVVAISMSED KEALLGCAID | 1500 |
SPKLHHPFNE ENMLIQGWVI GKHSPAKLIK FICGDRVIGE SKMNQERDDV AKVFPDVPHA | 1560 |
IDSGFVKTID VSETPSEVEI LILATMEDGN EIPVSTLHLR HGSSDD | 1606 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.