CAZyme3D

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Entry ID

Information for CAZyme ID: CCO16683.1

Basic Information

GenBank IDCCO16683.1
FamilyCBM20
Sequence Length270
UniProt IDK8F546(100,100)Download
Average pLDDT?68.16
CAZy50 ID166134
CAZy50 RepYes, CCO16683.1
Structure ClusterSC_CBM20_clus20
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID41875
KingdomEukaryota
PhylumChlorophyta
ClassMamiellophyceae
OrderMamiellales
FamilyBathycoccaceae
GenusBathycoccus
SpeciesBathycoccus prasinos

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTLGSQAEMI  NGNEVDDSQL  SSSSSQQLVA  LRCQFHAELK  VGETLVIVGS  TPLLGKWKAE60
DGFKLSWTEG  NVWRGNLPIE  RKEFEFKLVV  EKRSGETFWE  KGTNRKVEET  FMQEVGTNAV120
EVKSTFGKNE  DMEVNVADGN  ASTMVQSNVV  EFAREEAEGK  KEEEKIVATT  TTKPTTTKKK180
AATKTKKAPS  TGAYRTVEKV  KYDNVALLKF  DELMEKNSTI  TAGDFKAIYP  EDAKMKAVEK240
RTVEFLLKGG  GGKFSYALNE  EAKGYGQLLL  270

Predicted 3D structure by AlphaFold2 with pLDDT = 68.16 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTLGSQAEMI  NGNEVDDSQL  SSSSSQQLVA  LRCQFHAELK  VGETLVIVGS  TPLLGKWKAE60
DGFKLSWTEG  NVWRGNLPIE  RKEFEFKLVV  EKRSGETFWE  KGTNRKVEET  FMQEVGTNAV120
EVKSTFGKNE  DMEVNVADGN  ASTMVQSNVV  EFAREEAEGK  KEEEKIVATT  TTKPTTTKKK180
AATKTKKAPS  TGAYRTVEKV  KYDNVALLKF  DELMEKNSTI  TAGDFKAIYP  EDAKMKAVEK240
RTVEFLLKGG  GGKFSYALNE  EAKGYGQLLL  270

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM20(32-108)

MTLGSQAEMI  NGNEVDDSQL  SSSSSQQLVA  LRCQFHAELK  VGETLVIVGS  TPLLGKWKAE60
DGFKLSWTEG  NVWRGNLPIE  RKEFEFKLVV  EKRSGETFWE  KGTNRKVEET  FMQEVGTNAV120
EVKSTFGKNE  DMEVNVADGN  ASTMVQSNVV  EFAREEAEGK  KEEEKIVATT  TTKPTTTKKK180
AATKTKKAPS  TGAYRTVEKV  KYDNVALLKF  DELMEKNSTI  TAGDFKAIYP  EDAKMKAVEK240
RTVEFLLKGG  GGKFSYALNE  EAKGYGQLLL  270

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help