CAZyme3D

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Entry ID

Information for CAZyme ID: CCO03822.1

Basic Information

GenBank IDCCO03822.1
FamilyGH5_4
Sequence Length904
UniProt IDW0U2W9(100,100)Download
Average pLDDT?90.39
CAZy50 ID19157
CAZy50 RepYes, CCO03822.1
Structure ClusterSC_GH5_clus12
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1160721
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus bicirculans (ex Wegman et al. 2014)

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKSVSKRYLS  FILSLLMAMT  IFIGLDLGDI  NAQALSGDTL  KNADTEAILE  DMGLGWNLGN60
SLDATGGSGL  DTETSWSNPK  TTQALIDKVK  SLGFNTVRVP  VSWGKHVSGD  NYTIDSAWLA120
RVKEVVDYCY  KNDMYVILNI  HHDTKSSASA  SGAGYYPRSS  AYSSSEKFVT  SVWSQMAEYF180
KDYDYHLIFE  TLNEPRLIGT  GYEWWFNKWS  IPSEVKDAID  CINRLNQKAV  DTIRNTGSNN240
KGRLIMCPGY  DASIDGATVS  GFKLPTDISG  NKNRIAVSVH  AYSPYNFAMN  VGSGSTSTYT300
SSIKSELRDL  FSTLKSNFRD  KGIPVVIGEF  GSTDKNNTAE  RVKWATDYTA  LAKKNNIPCV360
LWDNNAFAVY  NGSSIVLNSE  YHGYINRKNN  TVTSPAKDVI  EALMKPYGKK  ADLNCSSSVT420
IVAGQSKNIG  ASSSTSGAVL  TYKSTTPSIC  TVDKNGNVTA  LRTGTGYVTI  TASANGYDSV480
SKDVKIVVSK  KSLNNGLLTL  SETSYVYDGT  YKKPAATVTF  GGKVLQEGKD  YTISYRNNLN540
VGVTTVIATG  MGDYTGYTSK  NFTITKRAMA  GGTVSVASSV  SFTGSNITPS  VTVKVAGRTL600
TSGTDYTVSY  SNNKNVGTSN  VYVYGKGNYS  GSLSAKFDIV  PAKQQIQKLE  TKYKGFYIDW660
AQKGSATGYD  IEYSVNSNMS  GAVSKHLTAN  KPDTLTVSGL  SGDKTYYVRV  RSYTNVNGKV720
YYGAWSDIKS  IKTANNDITK  ATVSGISTKA  FTGKAITQNV  TVKVGNTVLK  NGTDYTVSYS780
NNKKVGKATV  KITGKGKYGG  VITKTFKINP  AKQEIQKLTA  KSKAFFVDWA  QKGSATGYEI840
QYATNSKFTG  AKKVAITNNK  TDKTTVSKLS  GNKKYYVRVR  SYTTVGGTKY  YGSWSATKTV900
TTKK904

Predicted 3D structure by AlphaFold2 with pLDDT = 90.39 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKSVSKRYLS  FILSLLMAMT  IFIGLDLGDI  NAQALSGDTL  KNADTEAILE  DMGLGWNLGN60
SLDATGGSGL  DTETSWSNPK  TTQALIDKVK  SLGFNTVRVP  VSWGKHVSGD  NYTIDSAWLA120
RVKEVVDYCY  KNDMYVILNI  HHDTKSSASA  SGAGYYPRSS  AYSSSEKFVT  SVWSQMAEYF180
KDYDYHLIFE  TLNEPRLIGT  GYEWWFNKWS  IPSEVKDAID  CINRLNQKAV  DTIRNTGSNN240
KGRLIMCPGY  DASIDGATVS  GFKLPTDISG  NKNRIAVSVH  AYSPYNFAMN  VGSGSTSTYT300
SSIKSELRDL  FSTLKSNFRD  KGIPVVIGEF  GSTDKNNTAE  RVKWATDYTA  LAKKNNIPCV360
LWDNNAFAVY  NGSSIVLNSE  YHGYINRKNN  TVTSPAKDVI  EALMKPYGKK  ADLNCSSSVT420
IVAGQSKNIG  ASSSTSGAVL  TYKSTTPSIC  TVDKNGNVTA  LRTGTGYVTI  TASANGYDSV480
SKDVKIVVSK  KSLNNGLLTL  SETSYVYDGT  YKKPAATVTF  GGKVLQEGKD  YTISYRNNLN540
VGVTTVIATG  MGDYTGYTSK  NFTITKRAMA  GGTVSVASSV  SFTGSNITPS  VTVKVAGRTL600
TSGTDYTVSY  SNNKNVGTSN  VYVYGKGNYS  GSLSAKFDIV  PAKQQIQKLE  TKYKGFYIDW660
AQKGSATGYD  IEYSVNSNMS  GAVSKHLTAN  KPDTLTVSGL  SGDKTYYVRV  RSYTNVNGKV720
YYGAWSDIKS  IKTANNDITK  ATVSGISTKA  FTGKAITQNV  TVKVGNTVLK  NGTDYTVSYS780
NNKKVGKATV  KITGKGKYGG  VITKTFKINP  AKQEIQKLTA  KSKAFFVDWA  QKGSATGYEI840
QYATNSKFTG  AKKVAITNNK  TDKTTVSKLS  GNKKYYVRVR  SYTTVGGTKY  YGSWSATKTV900
TTKK904

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_4(73-365)

MKSVSKRYLS  FILSLLMAMT  IFIGLDLGDI  NAQALSGDTL  KNADTEAILE  DMGLGWNLGN60
SLDATGGSGL  DTETSWSNPK  TTQALIDKVK  SLGFNTVRVP  VSWGKHVSGD  NYTIDSAWLA120
RVKEVVDYCY  KNDMYVILNI  HHDTKSSASA  SGAGYYPRSS  AYSSSEKFVT  SVWSQMAEYF180
KDYDYHLIFE  TLNEPRLIGT  GYEWWFNKWS  IPSEVKDAID  CINRLNQKAV  DTIRNTGSNN240
KGRLIMCPGY  DASIDGATVS  GFKLPTDISG  NKNRIAVSVH  AYSPYNFAMN  VGSGSTSTYT300
SSIKSELRDL  FSTLKSNFRD  KGIPVVIGEF  GSTDKNNTAE  RVKWATDYTA  LAKKNNIPCV360
LWDNNAFAVY  NGSSIVLNSE  YHGYINRKNN  TVTSPAKDVI  EALMKPYGKK  ADLNCSSSVT420
IVAGQSKNIG  ASSSTSGAVL  TYKSTTPSIC  TVDKNGNVTA  LRTGTGYVTI  TASANGYDSV480
SKDVKIVVSK  KSLNNGLLTL  SETSYVYDGT  YKKPAATVTF  GGKVLQEGKD  YTISYRNNLN540
VGVTTVIATG  MGDYTGYTSK  NFTITKRAMA  GGTVSVASSV  SFTGSNITPS  VTVKVAGRTL600
TSGTDYTVSY  SNNKNVGTSN  VYVYGKGNYS  GSLSAKFDIV  PAKQQIQKLE  TKYKGFYIDW660
AQKGSATGYD  IEYSVNSNMS  GAVSKHLTAN  KPDTLTVSGL  SGDKTYYVRV  RSYTNVNGKV720
YYGAWSDIKS  IKTANNDITK  ATVSGISTKA  FTGKAITQNV  TVKVGNTVLK  NGTDYTVSYS780
NNKKVGKATV  KITGKGKYGG  VITKTFKINP  AKQEIQKLTA  KSKAFFVDWA  QKGSATGYEI840
QYATNSKFTG  AKKVAITNNK  TDKTTVSKLS  GNKKYYVRVR  SYTTVGGTKY  YGSWSATKTV900
TTKK904

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help