Information for CAZyme ID: CCO03822.1
Basic Information
GenBank ID | CCO03822.1 |
Family | GH5_4 |
Sequence Length | 904 |
UniProt ID | W0U2W9(100,100)![]() |
Average pLDDT? | 90.39 |
CAZy50 ID | 19157 |
CAZy50 Rep | Yes, CCO03822.1 |
Structure Cluster | SC_GH5_clus12 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 1160721 |
Kingdom | Bacteria |
Phylum | Bacillota |
Class | Clostridia |
Order | Eubacteriales |
Family | Oscillospiraceae |
Genus | Ruminococcus |
Species | Ruminococcus bicirculans (ex Wegman et al. 2014) |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MKSVSKRYLS FILSLLMAMT IFIGLDLGDI NAQALSGDTL KNADTEAILE DMGLGWNLGN | 60 |
SLDATGGSGL DTETSWSNPK TTQALIDKVK SLGFNTVRVP VSWGKHVSGD NYTIDSAWLA | 120 |
RVKEVVDYCY KNDMYVILNI HHDTKSSASA SGAGYYPRSS AYSSSEKFVT SVWSQMAEYF | 180 |
KDYDYHLIFE TLNEPRLIGT GYEWWFNKWS IPSEVKDAID CINRLNQKAV DTIRNTGSNN | 240 |
KGRLIMCPGY DASIDGATVS GFKLPTDISG NKNRIAVSVH AYSPYNFAMN VGSGSTSTYT | 300 |
SSIKSELRDL FSTLKSNFRD KGIPVVIGEF GSTDKNNTAE RVKWATDYTA LAKKNNIPCV | 360 |
LWDNNAFAVY NGSSIVLNSE YHGYINRKNN TVTSPAKDVI EALMKPYGKK ADLNCSSSVT | 420 |
IVAGQSKNIG ASSSTSGAVL TYKSTTPSIC TVDKNGNVTA LRTGTGYVTI TASANGYDSV | 480 |
SKDVKIVVSK KSLNNGLLTL SETSYVYDGT YKKPAATVTF GGKVLQEGKD YTISYRNNLN | 540 |
VGVTTVIATG MGDYTGYTSK NFTITKRAMA GGTVSVASSV SFTGSNITPS VTVKVAGRTL | 600 |
TSGTDYTVSY SNNKNVGTSN VYVYGKGNYS GSLSAKFDIV PAKQQIQKLE TKYKGFYIDW | 660 |
AQKGSATGYD IEYSVNSNMS GAVSKHLTAN KPDTLTVSGL SGDKTYYVRV RSYTNVNGKV | 720 |
YYGAWSDIKS IKTANNDITK ATVSGISTKA FTGKAITQNV TVKVGNTVLK NGTDYTVSYS | 780 |
NNKKVGKATV KITGKGKYGG VITKTFKINP AKQEIQKLTA KSKAFFVDWA QKGSATGYEI | 840 |
QYATNSKFTG AKKVAITNNK TDKTTVSKLS GNKKYYVRVR SYTTVGGTKY YGSWSATKTV | 900 |
TTKK | 904 |
Predicted 3D structure by AlphaFold2 with pLDDT = 90.39 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MKSVSKRYLS FILSLLMAMT IFIGLDLGDI NAQALSGDTL KNADTEAILE DMGLGWNLGN | 60 |
SLDATGGSGL DTETSWSNPK TTQALIDKVK SLGFNTVRVP VSWGKHVSGD NYTIDSAWLA | 120 |
RVKEVVDYCY KNDMYVILNI HHDTKSSASA SGAGYYPRSS AYSSSEKFVT SVWSQMAEYF | 180 |
KDYDYHLIFE TLNEPRLIGT GYEWWFNKWS IPSEVKDAID CINRLNQKAV DTIRNTGSNN | 240 |
KGRLIMCPGY DASIDGATVS GFKLPTDISG NKNRIAVSVH AYSPYNFAMN VGSGSTSTYT | 300 |
SSIKSELRDL FSTLKSNFRD KGIPVVIGEF GSTDKNNTAE RVKWATDYTA LAKKNNIPCV | 360 |
LWDNNAFAVY NGSSIVLNSE YHGYINRKNN TVTSPAKDVI EALMKPYGKK ADLNCSSSVT | 420 |
IVAGQSKNIG ASSSTSGAVL TYKSTTPSIC TVDKNGNVTA LRTGTGYVTI TASANGYDSV | 480 |
SKDVKIVVSK KSLNNGLLTL SETSYVYDGT YKKPAATVTF GGKVLQEGKD YTISYRNNLN | 540 |
VGVTTVIATG MGDYTGYTSK NFTITKRAMA GGTVSVASSV SFTGSNITPS VTVKVAGRTL | 600 |
TSGTDYTVSY SNNKNVGTSN VYVYGKGNYS GSLSAKFDIV PAKQQIQKLE TKYKGFYIDW | 660 |
AQKGSATGYD IEYSVNSNMS GAVSKHLTAN KPDTLTVSGL SGDKTYYVRV RSYTNVNGKV | 720 |
YYGAWSDIKS IKTANNDITK ATVSGISTKA FTGKAITQNV TVKVGNTVLK NGTDYTVSYS | 780 |
NNKKVGKATV KITGKGKYGG VITKTFKINP AKQEIQKLTA KSKAFFVDWA QKGSATGYEI | 840 |
QYATNSKFTG AKKVAITNNK TDKTTVSKLS GNKKYYVRVR SYTTVGGTKY YGSWSATKTV | 900 |
TTKK | 904 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.