CAZyme3D

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Entry ID

Information for CAZyme ID: CCK69921.1

Basic Information

GenBank IDCCK69921.1
FamilyCBM21
Sequence Length619
UniProt IDJ7S6R9(100,100)Download
Average pLDDT?53.43
CAZy50 ID49732
CAZy50 RepYes, CCK69921.1
Structure ClusterSC_CBM21_clus5
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1071383
KingdomEukaryota
PhylumAscomycota
ClassSaccharomycetes
OrderSaccharomycetales
FamilySaccharomycetaceae
GenusKazachstania
SpeciesKazachstania naganishii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYINTAKRNN  STTQNSPNLR  LDSSRSTYTP  NLSVSVPGVG  NTRKKKSDVG  STFQGKEQQK60
LRGSVPQNKT  NARKSVLGTP  EVAVAPTRIF  PDADGTSYFT  PKPMSNAIGQ  SPVTSPKRTS120
KPKQPAAVKT  GERVNTLEYL  SRPKRINEFR  STADDDNLIR  INTEHNRHIP  MIRSKSLPFN180
STKLKSNLKK  AAAAAGEPRP  ELQRSKSVHF  EETLPIKYFH  LEESPLLVSR  HNSSDELICK240
INFDRQIPLG  RMQLLSVDSD  DDDDGDASDD  EPDGFYDLNF  AILKNNGAPG  HHSNMDLKLN300
IFVNSKLNKN  IILQSMRLVK  RKMFNNTNDY  FIWGKVLVKN  YFFEKLIYIR  YTLNDWESYS360
EVRAKYLPTP  PQVQVEQDRI  SDGDKYDTFE  FSILNLKHLI  ANENEHRGAE  TATTNNQSEV420
GGTLKFCIRY  ETYNPRDPTE  RYEFWGNNSD  KNYSFRVVLH  DRDTVADRED  TAASRDGAHS480
RTNLFNDKYY  SVANELGSYN  RKTNKLGGIS  GSPSGNRHHT  RTGSSSHSLA  VQNNQRSTAS540
SKKKSIFEEF  LRDAARDQDH  NDSDDDYDGD  DLSDFNFKKP  INKDKYWFHN  ELVKTSTLSG600
GGDQEPRMTF  RNFRNPFAG619

Predicted 3D structure by AlphaFold2 with pLDDT = 53.43 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MYINTAKRNN  STTQNSPNLR  LDSSRSTYTP  NLSVSVPGVG  NTRKKKSDVG  STFQGKEQQK60
LRGSVPQNKT  NARKSVLGTP  EVAVAPTRIF  PDADGTSYFT  PKPMSNAIGQ  SPVTSPKRTS120
KPKQPAAVKT  GERVNTLEYL  SRPKRINEFR  STADDDNLIR  INTEHNRHIP  MIRSKSLPFN180
STKLKSNLKK  AAAAAGEPRP  ELQRSKSVHF  EETLPIKYFH  LEESPLLVSR  HNSSDELICK240
INFDRQIPLG  RMQLLSVDSD  DDDDGDASDD  EPDGFYDLNF  AILKNNGAPG  HHSNMDLKLN300
IFVNSKLNKN  IILQSMRLVK  RKMFNNTNDY  FIWGKVLVKN  YFFEKLIYIR  YTLNDWESYS360
EVRAKYLPTP  PQVQVEQDRI  SDGDKYDTFE  FSILNLKHLI  ANENEHRGAE  TATTNNQSEV420
GGTLKFCIRY  ETYNPRDPTE  RYEFWGNNSD  KNYSFRVVLH  DRDTVADRED  TAASRDGAHS480
RTNLFNDKYY  SVANELGSYN  RKTNKLGGIS  GSPSGNRHHT  RTGSSSHSLA  VQNNQRSTAS540
SKKKSIFEEF  LRDAARDQDH  NDSDDDYDGD  DLSDFNFKKP  INKDKYWFHN  ELVKTSTLSG600
GGDQEPRMTF  RNFRNPFAG619

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM21(319-454)

MYINTAKRNN  STTQNSPNLR  LDSSRSTYTP  NLSVSVPGVG  NTRKKKSDVG  STFQGKEQQK60
LRGSVPQNKT  NARKSVLGTP  EVAVAPTRIF  PDADGTSYFT  PKPMSNAIGQ  SPVTSPKRTS120
KPKQPAAVKT  GERVNTLEYL  SRPKRINEFR  STADDDNLIR  INTEHNRHIP  MIRSKSLPFN180
STKLKSNLKK  AAAAAGEPRP  ELQRSKSVHF  EETLPIKYFH  LEESPLLVSR  HNSSDELICK240
INFDRQIPLG  RMQLLSVDSD  DDDDGDASDD  EPDGFYDLNF  AILKNNGAPG  HHSNMDLKLN300
IFVNSKLNKN  IILQSMRLVK  RKMFNNTNDY  FIWGKVLVKN  YFFEKLIYIR  YTLNDWESYS360
EVRAKYLPTP  PQVQVEQDRI  SDGDKYDTFE  FSILNLKHLI  ANENEHRGAE  TATTNNQSEV420
GGTLKFCIRY  ETYNPRDPTE  RYEFWGNNSD  KNYSFRVVLH  DRDTVADRED  TAASRDGAHS480
RTNLFNDKYY  SVANELGSYN  RKTNKLGGIS  GSPSGNRHHT  RTGSSSHSLA  VQNNQRSTAS540
SKKKSIFEEF  LRDAARDQDH  NDSDDDYDGD  DLSDFNFKKP  INKDKYWFHN  ELVKTSTLSG600
GGDQEPRMTF  RNFRNPFAG619

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help