CAZyme3D

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Entry ID

Information for CAZyme ID: CCH30389.1

Basic Information

GenBank IDCCH30389.1
FamilyCBM35
Sequence Length1004
UniProt IDK0K0G9(100,100)Download
Average pLDDT?80.67
CAZy50 ID14149
CAZy50 RepYes, CCH30389.1
Structure ClusterSC_CBM35_clus47
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1179773
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusSaccharothrix
SpeciesSaccharothrix espanaensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAPRPLSAAL  AAATVFALLS  APGTALAAPP  QPAADHPSAD  HPAGSPSTPG  SASEAVRVDR60
GAGITAVRYE  AESAALDHAA  VESNHIGFSG  PGFVNFDNVA  GSHAEFTVTA  DRAGPATLTL120
RYANGSAADR  PMGLAVNGTA  AGDRPFAATG  GWTTWQSVTA  PVTLVAGANR  VRLTSATGTG180
GPNLDHLELE  QAATDYQAES  AALDRAAVES  DHAGFTGTGF  VDYDNVAGSR  VDYTVTADRA240
GPHALTFRYA  NGTDVDRPLS  VTVDGGQATP  AAFPGTGAWT  TWREVTVTAT  LKAGRNRIRA300
AATTANGGPN  ADRLTVAPTG  PADTEAPAPP  PNLRATGKTA  TTTSLAWDAA  TDNVGVVGYD360
VYQHGQLMKS  VDGATLATTV  GGLAPDTEYD  WTVFARDAAP  NVSPASNNVL  VRTDQAPPDG420
EAPSTPADLR  ATGRTATSVD  LAWTASTDNV  GVTGYQVFRD  GAQAGTSDGP  ATTVGGLTSG480
TAYRFTVRAR  DAAGNLSPFG  NEVTATPGGS  GPAGVPNPGA  VTTILSGTDV  PWGLAFLPDG540
SALLTERETF  TVYKLSETGT  RTNLGKVPGA  QNTNGEGGVL  GIEVSPTFAS  DGYVFIYHTA600
AAGNQLVRAK  LTGTTLGGWT  TLLSGVPKSR  YHNGGRLRFS  PDGKHLFVST  GDAQNKANAQ660
NLNTNAGKIL  RLDPDGSIPA  DNPYPGKAVW  SFGHRNVQGL  DFDSQGRLWA  SEFGDSTTDE720
VNLIQKAGNF  GWPDCEGTSG  GGCAGTIAPK  KSWSTSVASP  SGLTIVNDHV  FVATTVGQRI780
YRMRIDPSAN  LVDQQVYFQG  TYNRLRTVEV  DRDGDLWLTT  STDKDGTANN  DRVLHIDVVY840
AGGFSLTSSA  FADNAMIPAK  HTCAGDGTAG  QDPSPPLAWT  GASGAKGYAV  VFADRADNGT900
KLHWAIWDIP  ASARSLPENL  GAGFAVPGQG  GAKQKAMGSG  ANAQKYFGPC  PGGSTNPYTF960
TLYALNTATV  PGLSSSSTMA  QVETAIKNAS  TANTVLRGRS  NAST1004

Predicted 3D structure by AlphaFold2 with pLDDT = 80.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MAPRPLSAAL  AAATVFALLS  APGTALAAPP  QPAADHPSAD  HPAGSPSTPG  SASEAVRVDR60
GAGITAVRYE  AESAALDHAA  VESNHIGFSG  PGFVNFDNVA  GSHAEFTVTA  DRAGPATLTL120
RYANGSAADR  PMGLAVNGTA  AGDRPFAATG  GWTTWQSVTA  PVTLVAGANR  VRLTSATGTG180
GPNLDHLELE  QAATDYQAES  AALDRAAVES  DHAGFTGTGF  VDYDNVAGSR  VDYTVTADRA240
GPHALTFRYA  NGTDVDRPLS  VTVDGGQATP  AAFPGTGAWT  TWREVTVTAT  LKAGRNRIRA300
AATTANGGPN  ADRLTVAPTG  PADTEAPAPP  PNLRATGKTA  TTTSLAWDAA  TDNVGVVGYD360
VYQHGQLMKS  VDGATLATTV  GGLAPDTEYD  WTVFARDAAP  NVSPASNNVL  VRTDQAPPDG420
EAPSTPADLR  ATGRTATSVD  LAWTASTDNV  GVTGYQVFRD  GAQAGTSDGP  ATTVGGLTSG480
TAYRFTVRAR  DAAGNLSPFG  NEVTATPGGS  GPAGVPNPGA  VTTILSGTDV  PWGLAFLPDG540
SALLTERETF  TVYKLSETGT  RTNLGKVPGA  QNTNGEGGVL  GIEVSPTFAS  DGYVFIYHTA600
AAGNQLVRAK  LTGTTLGGWT  TLLSGVPKSR  YHNGGRLRFS  PDGKHLFVST  GDAQNKANAQ660
NLNTNAGKIL  RLDPDGSIPA  DNPYPGKAVW  SFGHRNVQGL  DFDSQGRLWA  SEFGDSTTDE720
VNLIQKAGNF  GWPDCEGTSG  GGCAGTIAPK  KSWSTSVASP  SGLTIVNDHV  FVATTVGQRI780
YRMRIDPSAN  LVDQQVYFQG  TYNRLRTVEV  DRDGDLWLTT  STDKDGTANN  DRVLHIDVVY840
AGGFSLTSSA  FADNAMIPAK  HTCAGDGTAG  QDPSPPLAWT  GASGAKGYAV  VFADRADNGT900
KLHWAIWDIP  ASARSLPENL  GAGFAVPGQG  GAKQKAMGSG  ANAQKYFGPC  PGGSTNPYTF960
TLYALNTATV  PGLSSSSTMA  QVETAIKNAS  TANTVLRGRS  NAST1004

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM35(69-189)+CBM35(196-316)

MAPRPLSAAL  AAATVFALLS  APGTALAAPP  QPAADHPSAD  HPAGSPSTPG  SASEAVRVDR60
GAGITAVRYE  AESAALDHAA  VESNHIGFSG  PGFVNFDNVA  GSHAEFTVTA  DRAGPATLTL120
RYANGSAADR  PMGLAVNGTA  AGDRPFAATG  GWTTWQSVTA  PVTLVAGANR  VRLTSATGTG180
GPNLDHLELE  QAATDYQAES  AALDRAAVES  DHAGFTGTGF  VDYDNVAGSR  VDYTVTADRA240
GPHALTFRYA  NGTDVDRPLS  VTVDGGQATP  AAFPGTGAWT  TWREVTVTAT  LKAGRNRIRA300
AATTANGGPN  ADRLTVAPTG  PADTEAPAPP  PNLRATGKTA  TTTSLAWDAA  TDNVGVVGYD360
VYQHGQLMKS  VDGATLATTV  GGLAPDTEYD  WTVFARDAAP  NVSPASNNVL  VRTDQAPPDG420
EAPSTPADLR  ATGRTATSVD  LAWTASTDNV  GVTGYQVFRD  GAQAGTSDGP  ATTVGGLTSG480
TAYRFTVRAR  DAAGNLSPFG  NEVTATPGGS  GPAGVPNPGA  VTTILSGTDV  PWGLAFLPDG540
SALLTERETF  TVYKLSETGT  RTNLGKVPGA  QNTNGEGGVL  GIEVSPTFAS  DGYVFIYHTA600
AAGNQLVRAK  LTGTTLGGWT  TLLSGVPKSR  YHNGGRLRFS  PDGKHLFVST  GDAQNKANAQ660
NLNTNAGKIL  RLDPDGSIPA  DNPYPGKAVW  SFGHRNVQGL  DFDSQGRLWA  SEFGDSTTDE720
VNLIQKAGNF  GWPDCEGTSG  GGCAGTIAPK  KSWSTSVASP  SGLTIVNDHV  FVATTVGQRI780
YRMRIDPSAN  LVDQQVYFQG  TYNRLRTVEV  DRDGDLWLTT  STDKDGTANN  DRVLHIDVVY840
AGGFSLTSSA  FADNAMIPAK  HTCAGDGTAG  QDPSPPLAWT  GASGAKGYAV  VFADRADNGT900
KLHWAIWDIP  ASARSLPENL  GAGFAVPGQG  GAKQKAMGSG  ANAQKYFGPC  PGGSTNPYTF960
TLYALNTATV  PGLSSSSTMA  QVETAIKNAS  TANTVLRGRS  NAST1004

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help