CAZyme3D

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Entry ID

Information for CAZyme ID: CCE61227.1

Basic Information

GenBank IDCCE61227.1
FamilyGH81
Sequence Length883
UniProt IDG8BMU9(100,100)Download
Average pLDDT?82.37
CAZy50 ID20509
CAZy50 RepYes, CCE61227.1
Structure ClusterSC_GH81_clus30
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1071381
KingdomEukaryota
PhylumAscomycota
ClassSaccharomycetes
OrderSaccharomycetales
FamilySaccharomycetaceae
GenusTetrapisispora
SpeciesTetrapisispora phaffii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSQLNRPVPS  VNIEEIPLTA  PPPYTELDPN  ASNESSNYSG  SSVLRIPPRI  PSRTNINRLI60
PVPKVPSRSN  SIIRRQEERI  QPPIPNRISG  NDRYSPGPKL  PPRPSSASDT  PELPARLSST120
GNSPVLPARP  QFSPSRSNSY  SRGSDCDGPP  LPTRPSSRSN  SENITTNLQG  WYSQDPIDQQ180
MDNLNLSNTL  FDTKLGKDAP  PSMFTRTDHD  VQIPNVYPQY  LPIETNKFYG  NILLGDQTLP240
IWTHPYSVWY  SKEDEFRGLA  ISHTKASQRV  FGDGDPPQFF  FSPPKINSLT  LSAMEFQNSG300
NMDLQIKNPK  HMSVNLEFRL  SNDQFMQTPL  IQGMGFVSAV  YHYITPVIYS  SIGFRSLEEL360
PAISRYTQKF  ESILENGRKW  IIYISSPDNT  RIAFKKMSNN  AYSADKRLPE  ILLQTVVDGI420
NEIDNAAGCY  PVDCVLSAIS  TNSTSKYGFH  YKTIGFSNSG  STLMFALPHH  VETFTEEMTN480
RKVDLYLDST  VKGIMTAYIT  NDFDMELATI  KDLGFQPFST  IPGKNKVEYN  NEQLEKIRNA540
ASMEVMGDVI  GESNLDSMYF  SGKILAKYAW  ILYCCQFILN  DSNLVNILLP  KLKLAMRNFT600
TNTQKLPLRY  DTSWKGIISS  GNESQDFGNS  YYNDHHFHSS  YHVQAAAIIV  YVEKQLGTLD660
WYYENKEWVE  VLIRDYANPI  EDKYFPVYRS  FDWYHGHSWA  KGLFASGDGK  DQESSSEDVN720
AAYALKLWSI  ASDDQNLGHL  SDIQLAVLQK  SITHYFLYAS  NNITEPFPFI  KNKVSGILFE780
NKIDHTTYFG  NLPQYIHMIH  AIPITPASSF  IRTPQFVKEE  WDCILSQIVG  GIEDGWKGII840
MLNVALFNPT  MSYQFFSSDT  FDKKFLDPGQ  SLTWSLVYSA  AFT883

Predicted 3D structure by AlphaFold2 with pLDDT = 82.37 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSQLNRPVPS  VNIEEIPLTA  PPPYTELDPN  ASNESSNYSG  SSVLRIPPRI  PSRTNINRLI60
PVPKVPSRSN  SIIRRQEERI  QPPIPNRISG  NDRYSPGPKL  PPRPSSASDT  PELPARLSST120
GNSPVLPARP  QFSPSRSNSY  SRGSDCDGPP  LPTRPSSRSN  SENITTNLQG  WYSQDPIDQQ180
MDNLNLSNTL  FDTKLGKDAP  PSMFTRTDHD  VQIPNVYPQY  LPIETNKFYG  NILLGDQTLP240
IWTHPYSVWY  SKEDEFRGLA  ISHTKASQRV  FGDGDPPQFF  FSPPKINSLT  LSAMEFQNSG300
NMDLQIKNPK  HMSVNLEFRL  SNDQFMQTPL  IQGMGFVSAV  YHYITPVIYS  SIGFRSLEEL360
PAISRYTQKF  ESILENGRKW  IIYISSPDNT  RIAFKKMSNN  AYSADKRLPE  ILLQTVVDGI420
NEIDNAAGCY  PVDCVLSAIS  TNSTSKYGFH  YKTIGFSNSG  STLMFALPHH  VETFTEEMTN480
RKVDLYLDST  VKGIMTAYIT  NDFDMELATI  KDLGFQPFST  IPGKNKVEYN  NEQLEKIRNA540
ASMEVMGDVI  GESNLDSMYF  SGKILAKYAW  ILYCCQFILN  DSNLVNILLP  KLKLAMRNFT600
TNTQKLPLRY  DTSWKGIISS  GNESQDFGNS  YYNDHHFHSS  YHVQAAAIIV  YVEKQLGTLD660
WYYENKEWVE  VLIRDYANPI  EDKYFPVYRS  FDWYHGHSWA  KGLFASGDGK  DQESSSEDVN720
AAYALKLWSI  ASDDQNLGHL  SDIQLAVLQK  SITHYFLYAS  NNITEPFPFI  KNKVSGILFE780
NKIDHTTYFG  NLPQYIHMIH  AIPITPASSF  IRTPQFVKEE  WDCILSQIVG  GIEDGWKGII840
MLNVALFNPT  MSYQFFSSDT  FDKKFLDPGQ  SLTWSLVYSA  AFT883

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH81(221-878)

MSQLNRPVPS  VNIEEIPLTA  PPPYTELDPN  ASNESSNYSG  SSVLRIPPRI  PSRTNINRLI60
PVPKVPSRSN  SIIRRQEERI  QPPIPNRISG  NDRYSPGPKL  PPRPSSASDT  PELPARLSST120
GNSPVLPARP  QFSPSRSNSY  SRGSDCDGPP  LPTRPSSRSN  SENITTNLQG  WYSQDPIDQQ180
MDNLNLSNTL  FDTKLGKDAP  PSMFTRTDHD  VQIPNVYPQY  LPIETNKFYG  NILLGDQTLP240
IWTHPYSVWY  SKEDEFRGLA  ISHTKASQRV  FGDGDPPQFF  FSPPKINSLT  LSAMEFQNSG300
NMDLQIKNPK  HMSVNLEFRL  SNDQFMQTPL  IQGMGFVSAV  YHYITPVIYS  SIGFRSLEEL360
PAISRYTQKF  ESILENGRKW  IIYISSPDNT  RIAFKKMSNN  AYSADKRLPE  ILLQTVVDGI420
NEIDNAAGCY  PVDCVLSAIS  TNSTSKYGFH  YKTIGFSNSG  STLMFALPHH  VETFTEEMTN480
RKVDLYLDST  VKGIMTAYIT  NDFDMELATI  KDLGFQPFST  IPGKNKVEYN  NEQLEKIRNA540
ASMEVMGDVI  GESNLDSMYF  SGKILAKYAW  ILYCCQFILN  DSNLVNILLP  KLKLAMRNFT600
TNTQKLPLRY  DTSWKGIISS  GNESQDFGNS  YYNDHHFHSS  YHVQAAAIIV  YVEKQLGTLD660
WYYENKEWVE  VLIRDYANPI  EDKYFPVYRS  FDWYHGHSWA  KGLFASGDGK  DQESSSEDVN720
AAYALKLWSI  ASDDQNLGHL  SDIQLAVLQK  SITHYFLYAS  NNITEPFPFI  KNKVSGILFE780
NKIDHTTYFG  NLPQYIHMIH  AIPITPASSF  IRTPQFVKEE  WDCILSQIVG  GIEDGWKGII840
MLNVALFNPT  MSYQFFSSDT  FDKKFLDPGQ  SLTWSLVYSA  AFT883

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help