CAZyme3D

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Entry ID

Information for CAZyme ID: CCC69441.1

Basic Information

GenBank IDCCC69441.1
FamilyGH72
Sequence Length501
UniProt IDG0VD79(100,100)Download
Average pLDDT?82.93
CAZy50 ID68702
CAZy50 RepYes, CCC69441.1
Structure ClusterSC_GH72_clus34
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1064592
KingdomEukaryota
PhylumAscomycota
ClassSaccharomycetes
OrderSaccharomycetales
FamilySaccharomycetaceae
GenusNaumovozyma
SpeciesNaumovozyma castellii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRYFRMFLRW  VMFALCLSFK  FANSESAINP  IIVQGNRFID  SVTGKPFFVK  GVDYQPGGSS60
EITEERDPLS  DPEVCARDIS  LFQELGINTV  RIYSVNPELN  HDKCMTMLAV  AGIYLVLDVN120
SPLDNQHLNR  YEPWTSYHPL  YLEHIFNIIE  EFSYYNNTLG  FFAGNEIVND  RRSAQYSPPY180
IKNVIKDMKQ  FIKLHSPRPI  PVGYSAADYL  RYRVSLSKYL  ECCEHGNSAS  SVDFYGINSY240
QWCGSQTMES  SGYDKLIDTY  KSYTKPLIFS  EFGCNKVLPR  QFEEVSALFS  DRMNDVFSGG300
LVYEFTQEPN  NYGLVKINGE  GDALLLDDFF  QLKKHYTHLD  QVGRQQLKVP  TRDGNLIFYE360
QKSKNNIPKN  GCPVCLDKYS  NLNIDTKVDS  DLGVFLIKEG  VSNEHGQFVQ  LEDSELVSKF420
KIYNGTGEVP  EKVKRIEILH  DLGIFNDVKD  KNRKQAGDNP  KTSTGFRLNQ  NLFAVFMCFM480
LLISDNILTG  IRNLAAFIYH  V501

Predicted 3D structure by AlphaFold2 with pLDDT = 82.93 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRYFRMFLRW  VMFALCLSFK  FANSESAINP  IIVQGNRFID  SVTGKPFFVK  GVDYQPGGSS60
EITEERDPLS  DPEVCARDIS  LFQELGINTV  RIYSVNPELN  HDKCMTMLAV  AGIYLVLDVN120
SPLDNQHLNR  YEPWTSYHPL  YLEHIFNIIE  EFSYYNNTLG  FFAGNEIVND  RRSAQYSPPY180
IKNVIKDMKQ  FIKLHSPRPI  PVGYSAADYL  RYRVSLSKYL  ECCEHGNSAS  SVDFYGINSY240
QWCGSQTMES  SGYDKLIDTY  KSYTKPLIFS  EFGCNKVLPR  QFEEVSALFS  DRMNDVFSGG300
LVYEFTQEPN  NYGLVKINGE  GDALLLDDFF  QLKKHYTHLD  QVGRQQLKVP  TRDGNLIFYE360
QKSKNNIPKN  GCPVCLDKYS  NLNIDTKVDS  DLGVFLIKEG  VSNEHGQFVQ  LEDSELVSKF420
KIYNGTGEVP  EKVKRIEILH  DLGIFNDVKD  KNRKQAGDNP  KTSTGFRLNQ  NLFAVFMCFM480
LLISDNILTG  IRNLAAFIYH  V501

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH72(26-337)

MRYFRMFLRW  VMFALCLSFK  FANSESAINP  IIVQGNRFID  SVTGKPFFVK  GVDYQPGGSS60
EITEERDPLS  DPEVCARDIS  LFQELGINTV  RIYSVNPELN  HDKCMTMLAV  AGIYLVLDVN120
SPLDNQHLNR  YEPWTSYHPL  YLEHIFNIIE  EFSYYNNTLG  FFAGNEIVND  RRSAQYSPPY180
IKNVIKDMKQ  FIKLHSPRPI  PVGYSAADYL  RYRVSLSKYL  ECCEHGNSAS  SVDFYGINSY240
QWCGSQTMES  SGYDKLIDTY  KSYTKPLIFS  EFGCNKVLPR  QFEEVSALFS  DRMNDVFSGG300
LVYEFTQEPN  NYGLVKINGE  GDALLLDDFF  QLKKHYTHLD  QVGRQQLKVP  TRDGNLIFYE360
QKSKNNIPKN  GCPVCLDKYS  NLNIDTKVDS  DLGVFLIKEG  VSNEHGQFVQ  LEDSELVSKF420
KIYNGTGEVP  EKVKRIEILH  DLGIFNDVKD  KNRKQAGDNP  KTSTGFRLNQ  NLFAVFMCFM480
LLISDNILTG  IRNLAAFIYH  V501

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help