CAZyme3D

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Entry ID

Information for CAZyme ID: CCB92249.1

Basic Information

GenBank IDCCB92249.1
FamilyGT4
Sequence Length424
UniProt IDF8LFH6(100,100)Download
Average pLDDT?86.38
CAZy50 ID87764
CAZy50 RepYes, CCB92249.1
Structure ClusterSC_GT4_clus185
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID765953
KingdomBacteria
PhylumChlamydiota
ClassChlamydiia
OrderParachlamydiales
FamilyWaddliaceae
GenusWaddlia
SpeciesWaddlia chondrophila

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLLFLYLLF  FCFCLSGIEH  PSIGIFTCKV  NGVGCWDPDS  INSGIAGSEE  AVIYLSKHLA60
DLGYTVTVYG  NPPPNSPHSR  ESANPRYIDV  DTNDEKQFDF  AVAWRMPSLG  LTLRQKAAHV120
YLWPHDTIHY  RLPKEQIETF  DDVFWLSEWQ  RQQWMAKNPE  FSRYRRIFGN  GIEPDQFTPI180
VPRSNPHSLI  YGSNYARGLE  ILLDNWPAIK  DRFSNATLDI  YYGWQHWGLL  SPEKEAKMRR240
QISDYKALSV  VDHERVSHEE  LNNAYAHASI  WAYPCIAPET  FCITALRAQG  SGTIPVVIEG300
TALSETVRGG  FKCSTPKEYL  STLFRAMESA  EQFTLADRKQ  LRTFVFEEYT  WKKIAEKWHS360
VFQEAYRIDN  SANLTFANSK  FFFTQSLTLP  GRSSLSRSFN  ETSRDFSNEI  FSNVVFGILK420
RTLI424

Predicted 3D structure by AlphaFold2 with pLDDT = 86.38 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRLLFLYLLF  FCFCLSGIEH  PSIGIFTCKV  NGVGCWDPDS  INSGIAGSEE  AVIYLSKHLA60
DLGYTVTVYG  NPPPNSPHSR  ESANPRYIDV  DTNDEKQFDF  AVAWRMPSLG  LTLRQKAAHV120
YLWPHDTIHY  RLPKEQIETF  DDVFWLSEWQ  RQQWMAKNPE  FSRYRRIFGN  GIEPDQFTPI180
VPRSNPHSLI  YGSNYARGLE  ILLDNWPAIK  DRFSNATLDI  YYGWQHWGLL  SPEKEAKMRR240
QISDYKALSV  VDHERVSHEE  LNNAYAHASI  WAYPCIAPET  FCITALRAQG  SGTIPVVIEG300
TALSETVRGG  FKCSTPKEYL  STLFRAMESA  EQFTLADRKQ  LRTFVFEEYT  WKKIAEKWHS360
VFQEAYRIDN  SANLTFANSK  FFFTQSLTLP  GRSSLSRSFN  ETSRDFSNEI  FSNVVFGILK420
RTLI424

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(197-310)

MRLLFLYLLF  FCFCLSGIEH  PSIGIFTCKV  NGVGCWDPDS  INSGIAGSEE  AVIYLSKHLA60
DLGYTVTVYG  NPPPNSPHSR  ESANPRYIDV  DTNDEKQFDF  AVAWRMPSLG  LTLRQKAAHV120
YLWPHDTIHY  RLPKEQIETF  DDVFWLSEWQ  RQQWMAKNPE  FSRYRRIFGN  GIEPDQFTPI180
VPRSNPHSLI  YGSNYARGLE  ILLDNWPAIK  DRFSNATLDI  YYGWQHWGLL  SPEKEAKMRR240
QISDYKALSV  VDHERVSHEE  LNNAYAHASI  WAYPCIAPET  FCITALRAQG  SGTIPVVIEG300
TALSETVRGG  FKCSTPKEYL  STLFRAMESA  EQFTLADRKQ  LRTFVFEEYT  WKKIAEKWHS360
VFQEAYRIDN  SANLTFANSK  FFFTQSLTLP  GRSSLSRSFN  ETSRDFSNEI  FSNVVFGILK420
RTLI424

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help