CAZyme3D

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Entry ID

Information for CAZyme ID: CBX96078.1

Basic Information

GenBank IDCBX96078.1
FamilyGH5_7
Sequence Length656
UniProt IDE4ZWV2(100,100)Download
Average pLDDT?70.89
CAZy50 ID44317
CAZy50 RepYes, CBX96078.1
Structure ClusterSC_GH5_clus255
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID985895
KingdomEukaryota
PhylumAscomycota
ClassDothideomycetes
OrderPleosporales
FamilyLeptosphaeriaceae
GenusPlenodomus
SpeciesPlenodomus lingam

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAKHILNQSQ  AAIDTPEDTT  VITVVRSSSA  DDSSIGTHGI  DTDVGLVSID  RCGEGGHGET60
QEGKEKREKM  HAGVNAEYTR  IFATYSPELP  QALSTDCPLA  ARGAGLFMIW  KEQISSKRQA120
IAMSAMVSES  PCIAGLQPNS  AAHGHMSQTM  FISSPSSLHR  NAQPALGMCE  TSHVNSIRAI180
IRRALDDSRY  RSVVPGTRLA  CVPILPRLLD  VLERLVPATA  VDKGKCANQS  KSIHLGHGSF240
IPSEFPLPRS  SGKMLYNTAS  LLLLASGASA  AVVKRQVPAG  FVTTKGTTFQ  LDGKDFYFAG300
SNAYYFPFND  LQSDVEAGLT  AGKKAGLNVF  RTWGFNDRNR  TTIAGGLPQY  GGEGAGPSPN360
VMQWWNNGVQ  EINLAPFDKV  VAAAEKTGMK  LIVALTNNWA  DYGGMDVYTA  NLGYRYHDDF420
YHVPAIKEAF  KKYVEAIVQR  YAKSPAIMAW  ELANEPRCGA  DGTRNLPRSD  NCTPEMITEW480
VDEFSTYIKS  LDKDHLVTWG  GEGGFNRPND  DGFYNGFDGG  DFDKELALKN  IDFGTFHTYP540
DWWSRSVEWA  NQWIIDHAAA  GRAVGKAVIH  EEYGWLTDAK  RQEFLGKTSN  ITRLEAIGLW600
QATSLEERMS  DCYWQFGYGG  YSYGRNHDDG  FTIFLEDAEA  QPLVYEHAAK  VNALNN656

Predicted 3D structure by AlphaFold2 with pLDDT = 70.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MAKHILNQSQ  AAIDTPEDTT  VITVVRSSSA  DDSSIGTHGI  DTDVGLVSID  RCGEGGHGET60
QEGKEKREKM  HAGVNAEYTR  IFATYSPELP  QALSTDCPLA  ARGAGLFMIW  KEQISSKRQA120
IAMSAMVSES  PCIAGLQPNS  AAHGHMSQTM  FISSPSSLHR  NAQPALGMCE  TSHVNSIRAI180
IRRALDDSRY  RSVVPGTRLA  CVPILPRLLD  VLERLVPATA  VDKGKCANQS  KSIHLGHGSF240
IPSEFPLPRS  SGKMLYNTAS  LLLLASGASA  AVVKRQVPAG  FVTTKGTTFQ  LDGKDFYFAG300
SNAYYFPFND  LQSDVEAGLT  AGKKAGLNVF  RTWGFNDRNR  TTIAGGLPQY  GGEGAGPSPN360
VMQWWNNGVQ  EINLAPFDKV  VAAAEKTGMK  LIVALTNNWA  DYGGMDVYTA  NLGYRYHDDF420
YHVPAIKEAF  KKYVEAIVQR  YAKSPAIMAW  ELANEPRCGA  DGTRNLPRSD  NCTPEMITEW480
VDEFSTYIKS  LDKDHLVTWG  GEGGFNRPND  DGFYNGFDGG  DFDKELALKN  IDFGTFHTYP540
DWWSRSVEWA  NQWIIDHAAA  GRAVGKAVIH  EEYGWLTDAK  RQEFLGKTSN  ITRLEAIGLW600
QATSLEERMS  DCYWQFGYGG  YSYGRNHDDG  FTIFLEDAEA  QPLVYEHAAK  VNALNN656

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_7(313-616)

MAKHILNQSQ  AAIDTPEDTT  VITVVRSSSA  DDSSIGTHGI  DTDVGLVSID  RCGEGGHGET60
QEGKEKREKM  HAGVNAEYTR  IFATYSPELP  QALSTDCPLA  ARGAGLFMIW  KEQISSKRQA120
IAMSAMVSES  PCIAGLQPNS  AAHGHMSQTM  FISSPSSLHR  NAQPALGMCE  TSHVNSIRAI180
IRRALDDSRY  RSVVPGTRLA  CVPILPRLLD  VLERLVPATA  VDKGKCANQS  KSIHLGHGSF240
IPSEFPLPRS  SGKMLYNTAS  LLLLASGASA  AVVKRQVPAG  FVTTKGTTFQ  LDGKDFYFAG300
SNAYYFPFND  LQSDVEAGLT  AGKKAGLNVF  RTWGFNDRNR  TTIAGGLPQY  GGEGAGPSPN360
VMQWWNNGVQ  EINLAPFDKV  VAAAEKTGMK  LIVALTNNWA  DYGGMDVYTA  NLGYRYHDDF420
YHVPAIKEAF  KKYVEAIVQR  YAKSPAIMAW  ELANEPRCGA  DGTRNLPRSD  NCTPEMITEW480
VDEFSTYIKS  LDKDHLVTWG  GEGGFNRPND  DGFYNGFDGG  DFDKELALKN  IDFGTFHTYP540
DWWSRSVEWA  NQWIIDHAAA  GRAVGKAVIH  EEYGWLTDAK  RQEFLGKTSN  ITRLEAIGLW600
QATSLEERMS  DCYWQFGYGG  YSYGRNHDDG  FTIFLEDAEA  QPLVYEHAAK  VNALNN656

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help