CAZyme3D

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Entry ID

Information for CAZyme ID: CBX91375.1

Basic Information

GenBank IDCBX91375.1
FamilyCBM18, GH16_19
Sequence Length763
UniProt IDE4ZJU0(100,100)Download
Average pLDDT?60.74
CAZy50 ID31266
CAZy50 RepYes, CBX91375.1
Structure ClusterSC_GH16_clus132
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID985895
KingdomEukaryota
PhylumAscomycota
ClassDothideomycetes
OrderPleosporales
FamilyLeptosphaeriaceae
GenusPlenodomus
SpeciesPlenodomus lingam

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQEATDSRPD  GKDDSCMPIH  HVPCTNIPRI  QPPLRPYLGV  YLLVLTGTVQ  GDRASTCLYA60
YKQRVGLVHV  SRQAQIGAGQ  AKNRIPTRTS  AMHKRVSSSL  SRGVWQPRAE  KGPEGPRPFL120
HLRVDGDSTC  VGDEVVYADV  MASRWDIVSC  GWPRACDPLV  RPRHLAKAVN  PDTRVASTPF180
LSSIARLPSL  DNVFSQRQES  GWANMNGLTL  ASLHKYWPTS  PPTHDSRKKG  ILEPPAHHTW240
ICAFRNPGSL  HWSPIHRLAR  SAHFLGALLE  SFWIWTALAS  LDQDQSGRLH  CDSCTPHSST300
LTRHSTSAQP  VANMVRTAFS  AALAAAALVR  TAYAAGAKCT  KDSHCPQDTP  CCSLYGDCGV360
GAFCLGGCDP  LMSHSFDSCV  PGPVCKSGTY  TLDSLDDVQT  IDKYLGDASK  INWQSQGMPA420
IYTDPNGKKS  TLLTMAQGTV  GTLLASTHYV  WYGKICSKLS  TAQGKGVVTA  FILMSDVKDE480
IDFEWVGVDT  GHVQSNFYSQ  GVTVYTNGKN  LTVPDQDTAS  TMHEYCIDWT  TDSLTWSING540
KDQRTLNRKD  TWNATSNRFD  YPQTPARIML  SLWPAGLPTN  EKGTIEWAGG  EIDWNSPYME600
NGYYYARFSE  VTVECYDPPP  NAQKKGSKTY  KYTDEAGTNN  TVAITDDEVI  LGSLMGTGEN660
PGEPPKSGDA  QPTNSIAMVP  GGNPGAGAAN  QVEQTPAADQ  AAGGAGANPA  QQTGGATQGG720
DVQTGFTQGG  SSVATGSAPE  GGLNRLGGSV  VAVVVAILAL  VAM763

Predicted 3D structure by AlphaFold2 with pLDDT = 60.74 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQEATDSRPD  GKDDSCMPIH  HVPCTNIPRI  QPPLRPYLGV  YLLVLTGTVQ  GDRASTCLYA60
YKQRVGLVHV  SRQAQIGAGQ  AKNRIPTRTS  AMHKRVSSSL  SRGVWQPRAE  KGPEGPRPFL120
HLRVDGDSTC  VGDEVVYADV  MASRWDIVSC  GWPRACDPLV  RPRHLAKAVN  PDTRVASTPF180
LSSIARLPSL  DNVFSQRQES  GWANMNGLTL  ASLHKYWPTS  PPTHDSRKKG  ILEPPAHHTW240
ICAFRNPGSL  HWSPIHRLAR  SAHFLGALLE  SFWIWTALAS  LDQDQSGRLH  CDSCTPHSST300
LTRHSTSAQP  VANMVRTAFS  AALAAAALVR  TAYAAGAKCT  KDSHCPQDTP  CCSLYGDCGV360
GAFCLGGCDP  LMSHSFDSCV  PGPVCKSGTY  TLDSLDDVQT  IDKYLGDASK  INWQSQGMPA420
IYTDPNGKKS  TLLTMAQGTV  GTLLASTHYV  WYGKICSKLS  TAQGKGVVTA  FILMSDVKDE480
IDFEWVGVDT  GHVQSNFYSQ  GVTVYTNGKN  LTVPDQDTAS  TMHEYCIDWT  TDSLTWSING540
KDQRTLNRKD  TWNATSNRFD  YPQTPARIML  SLWPAGLPTN  EKGTIEWAGG  EIDWNSPYME600
NGYYYARFSE  VTVECYDPPP  NAQKKGSKTY  KYTDEAGTNN  TVAITDDEVI  LGSLMGTGEN660
PGEPPKSGDA  QPTNSIAMVP  GGNPGAGAAN  QVEQTPAADQ  AAGGAGANPA  QQTGGATQGG720
DVQTGFTQGG  SSVATGSAPE  GGLNRLGGSV  VAVVVAILAL  VAM763

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH16_19(427-593)

MQEATDSRPD  GKDDSCMPIH  HVPCTNIPRI  QPPLRPYLGV  YLLVLTGTVQ  GDRASTCLYA60
YKQRVGLVHV  SRQAQIGAGQ  AKNRIPTRTS  AMHKRVSSSL  SRGVWQPRAE  KGPEGPRPFL120
HLRVDGDSTC  VGDEVVYADV  MASRWDIVSC  GWPRACDPLV  RPRHLAKAVN  PDTRVASTPF180
LSSIARLPSL  DNVFSQRQES  GWANMNGLTL  ASLHKYWPTS  PPTHDSRKKG  ILEPPAHHTW240
ICAFRNPGSL  HWSPIHRLAR  SAHFLGALLE  SFWIWTALAS  LDQDQSGRLH  CDSCTPHSST300
LTRHSTSAQP  VANMVRTAFS  AALAAAALVR  TAYAAGAKCT  KDSHCPQDTP  CCSLYGDCGV360
GAFCLGGCDP  LMSHSFDSCV  PGPVCKSGTY  TLDSLDDVQT  IDKYLGDASK  INWQSQGMPA420
IYTDPNGKKS  TLLTMAQGTV  GTLLASTHYV  WYGKICSKLS  TAQGKGVVTA  FILMSDVKDE480
IDFEWVGVDT  GHVQSNFYSQ  GVTVYTNGKN  LTVPDQDTAS  TMHEYCIDWT  TDSLTWSING540
KDQRTLNRKD  TWNATSNRFD  YPQTPARIML  SLWPAGLPTN  EKGTIEWAGG  EIDWNSPYME600
NGYYYARFSE  VTVECYDPPP  NAQKKGSKTY  KYTDEAGTNN  TVAITDDEVI  LGSLMGTGEN660
PGEPPKSGDA  QPTNSIAMVP  GGNPGAGAAN  QVEQTPAADQ  AAGGAGANPA  QQTGGATQGG720
DVQTGFTQGG  SSVATGSAPE  GGLNRLGGSV  VAVVVAILAL  VAM763

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help