CAZyme3D

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Entry ID

Information for CAZyme ID: CBL44466.1

Basic Information

GenBank IDCBL44466.1
FamilyGH5_43
Sequence Length728
UniProt IDE1VI24(100,100)Download
Average pLDDT?88.61
CAZy50 ID35285
CAZy50 RepYes, CBL44466.1
Structure ClusterSC_GH5_clus72
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID83406
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
Order
Family
Genus
Speciesgamma proteobacterium HdN1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNTPRIGPLA  LILFSSFSLG  NTLCFAGNDI  HIDQRHIDFK  DGNSALTISE  PTFRDGAGRE60
VHFRGWNVSG  SVKLASRGFK  PFASTEDARR  SFESMKRHTG  ANLVRFTVSW  EGNNPRPGEI120
DYGYAAAITE  QIREAVRQQI  YVFIDFHTDL  YSRYLFQQNS  PHTGNGAPQW  IIDGGSYPKS180
NCGPFCFAWS  QNIITNPAVR  LGYRNFFDNA  PVKTDVGETR  VQDAFLWQMG  KLLEYIKAEL240
SAEEFQWVVG  VQPFNEPIYG  RGHNNRASEF  DNEKLWPFYK  RSRAVADQTG  WGEKWIFAEP300
MVFWDTNVGF  FTPATGGHYL  KEKVGKGFVF  APHFYDAARM  GVSNLGKVQN  GEYFQNLDRV360
REEGRFLGIP  TVLGEFGMWL  KDQKGGARDH  ARIVNATYQA  MEASDSQHSF  KDRRPDFYTA420
TVSGTQWHWD  INKDNHFEYQ  NGNPKKLMTK  GDGWNGEDFS  VIRGDELVVD  ARGVQRAYPR480
AVDGNTVSFY  FNALPVDGAG  KTLEWAEIRT  GGESFLGDRR  FALLVWQGGG  SADTELFLPT540
DFLPESTSLI  TERYVYSNLG  SAKDHALADV  RYVPEFNRGL  TGYRLLISGD  GAVSKKALHF600
ALVVNDSLYD  DAALRALQSS  LVEQINHHEH  PVFLRGRMAG  LNYPSEAPNE  NPHPVALSAS660
EEHFLLFRWI  SLQWKASGDV  TVFQKGKPIL  SAGREGSSTV  LSLLGAKDTF  SVCEQADTSR720
CSRTLTFD728

Predicted 3D structure by AlphaFold2 with pLDDT = 88.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNTPRIGPLA  LILFSSFSLG  NTLCFAGNDI  HIDQRHIDFK  DGNSALTISE  PTFRDGAGRE60
VHFRGWNVSG  SVKLASRGFK  PFASTEDARR  SFESMKRHTG  ANLVRFTVSW  EGNNPRPGEI120
DYGYAAAITE  QIREAVRQQI  YVFIDFHTDL  YSRYLFQQNS  PHTGNGAPQW  IIDGGSYPKS180
NCGPFCFAWS  QNIITNPAVR  LGYRNFFDNA  PVKTDVGETR  VQDAFLWQMG  KLLEYIKAEL240
SAEEFQWVVG  VQPFNEPIYG  RGHNNRASEF  DNEKLWPFYK  RSRAVADQTG  WGEKWIFAEP300
MVFWDTNVGF  FTPATGGHYL  KEKVGKGFVF  APHFYDAARM  GVSNLGKVQN  GEYFQNLDRV360
REEGRFLGIP  TVLGEFGMWL  KDQKGGARDH  ARIVNATYQA  MEASDSQHSF  KDRRPDFYTA420
TVSGTQWHWD  INKDNHFEYQ  NGNPKKLMTK  GDGWNGEDFS  VIRGDELVVD  ARGVQRAYPR480
AVDGNTVSFY  FNALPVDGAG  KTLEWAEIRT  GGESFLGDRR  FALLVWQGGG  SADTELFLPT540
DFLPESTSLI  TERYVYSNLG  SAKDHALADV  RYVPEFNRGL  TGYRLLISGD  GAVSKKALHF600
ALVVNDSLYD  DAALRALQSS  LVEQINHHEH  PVFLRGRMAG  LNYPSEAPNE  NPHPVALSAS660
EEHFLLFRWI  SLQWKASGDV  TVFQKGKPIL  SAGREGSSTV  LSLLGAKDTF  SVCEQADTSR720
CSRTLTFD728

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_43(55-428)

MNTPRIGPLA  LILFSSFSLG  NTLCFAGNDI  HIDQRHIDFK  DGNSALTISE  PTFRDGAGRE60
VHFRGWNVSG  SVKLASRGFK  PFASTEDARR  SFESMKRHTG  ANLVRFTVSW  EGNNPRPGEI120
DYGYAAAITE  QIREAVRQQI  YVFIDFHTDL  YSRYLFQQNS  PHTGNGAPQW  IIDGGSYPKS180
NCGPFCFAWS  QNIITNPAVR  LGYRNFFDNA  PVKTDVGETR  VQDAFLWQMG  KLLEYIKAEL240
SAEEFQWVVG  VQPFNEPIYG  RGHNNRASEF  DNEKLWPFYK  RSRAVADQTG  WGEKWIFAEP300
MVFWDTNVGF  FTPATGGHYL  KEKVGKGFVF  APHFYDAARM  GVSNLGKVQN  GEYFQNLDRV360
REEGRFLGIP  TVLGEFGMWL  KDQKGGARDH  ARIVNATYQA  MEASDSQHSF  KDRRPDFYTA420
TVSGTQWHWD  INKDNHFEYQ  NGNPKKLMTK  GDGWNGEDFS  VIRGDELVVD  ARGVQRAYPR480
AVDGNTVSFY  FNALPVDGAG  KTLEWAEIRT  GGESFLGDRR  FALLVWQGGG  SADTELFLPT540
DFLPESTSLI  TERYVYSNLG  SAKDHALADV  RYVPEFNRGL  TGYRLLISGD  GAVSKKALHF600
ALVVNDSLYD  DAALRALQSS  LVEQINHHEH  PVFLRGRMAG  LNYPSEAPNE  NPHPVALSAS660
EEHFLLFRWI  SLQWKASGDV  TVFQKGKPIL  SAGREGSSTV  LSLLGAKDTF  SVCEQADTSR720
CSRTLTFD728

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help