Information for CAZyme ID: CBK96946.1
Basic Information
| GenBank ID | CBK96946.1 |
| Family | GH2 |
| Sequence Length | 999 |
| UniProt ID | D4JV27(100,100) |
| Average pLDDT? | 96.15 |
| CAZy50 ID | 14387 |
| CAZy50 Rep | Yes, CBK96946.1 |
| Structure Cluster | SC_GH2_clus84 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 657319 |
| Kingdom | Bacteria |
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | |
| Species | [Eubacterium] siraeum |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKYTLDWLTN PEVFAVNRIA AHSDHRIYAN HFEADADNSS LIQNLNGTWK FAWAKNPSEW | 60 |
| QQKFYEESNS TDNFDNIQVP GYMELQGYGK PQYVNTIYPW EGQEHLRPPF ISEKDNPVGS | 120 |
| YVRYFDLNDA LKNKRVFISF QGVENAVYVW LNGEFIGYSE DSFTPSEFEL TPYIREKNNK | 180 |
| LAVAVFKRSS ASWLEDQDFW RFSGIFRDVF LYAAPYAHVR DMRVIADYDG TNGIFSATLD | 240 |
| IAGKCSVKSI LTDENGTVIA ESNEKESVNL TIENSKPWSA EIPNLYTFTV ILTDESGNEI | 300 |
| EVSRTKVGFR RFELKNGIMC LNGKRIIFKG INRHEFDAKT GRAITKEDML FDIRFMKKNN | 360 |
| INAVRTCHYP NNSLWYQLCD AYGIYLIDET NLETHGTWQK LGATDPSWNV PGSLPEWKEA | 420 |
| VLDRAKSMYE RDKNHASVLI WSCGNESYCG EDIAAMSEYF RSADPTRLVH YEGVTRVPDN | 480 |
| QYDFITDMES RMYAKPQEVE EYLKQNSGRP YISCEYMHAM GNSLGGLSLY TDLEDKYEAY | 540 |
| QGGFIWDYID QAIETQNDDG KTVLAYGGDF EDRPSDYGFC TNGVIYADRT YSPKVQEMKA | 600 |
| LYSNIRMSIQ NGMLTVENRN LFADTNNLSF VVRLEKNGVV LKSDTFSLNV PAGESKTKKL | 660 |
| TLHKIDSVGE YVYHVSAVTA DQTLWADAGH EIAFAQEVFE VKDNQIPETT LQKPTIVYSD | 720 |
| VIIGVHGENF SMMFDKKEGG ISSLKYNDYE YITRTPKVSF WRAMTDNDTG ASEPYNLAQW | 780 |
| YVAGKFAKYK TVSWLEQEDA LKITFTYQAA CIPTFEFTVT YTAHFDGKLG VSVNYAGVSG | 840 |
| MSDMPILALD FKMKKQLCNF QYYGLGPDEN YSDRCKGARL GLWKSTAKEN LSGYLNPQEC | 900 |
| GNRTGVRTLS VHDDMQHGLT FQKASAPFEM NVLPYSAYEL ENAMHPDELP SVRYTWVRIA | 960 |
| AKQMGVGGDD SWGAPVHEEY RIHADQPMKL EFVIMPLRS | 999 |
Predicted 3D structure by AlphaFold2 with pLDDT = 96.15 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKYTLDWLTN PEVFAVNRIA AHSDHRIYAN HFEADADNSS LIQNLNGTWK FAWAKNPSEW | 60 |
| QQKFYEESNS TDNFDNIQVP GYMELQGYGK PQYVNTIYPW EGQEHLRPPF ISEKDNPVGS | 120 |
| YVRYFDLNDA LKNKRVFISF QGVENAVYVW LNGEFIGYSE DSFTPSEFEL TPYIREKNNK | 180 |
| LAVAVFKRSS ASWLEDQDFW RFSGIFRDVF LYAAPYAHVR DMRVIADYDG TNGIFSATLD | 240 |
| IAGKCSVKSI LTDENGTVIA ESNEKESVNL TIENSKPWSA EIPNLYTFTV ILTDESGNEI | 300 |
| EVSRTKVGFR RFELKNGIMC LNGKRIIFKG INRHEFDAKT GRAITKEDML FDIRFMKKNN | 360 |
| INAVRTCHYP NNSLWYQLCD AYGIYLIDET NLETHGTWQK LGATDPSWNV PGSLPEWKEA | 420 |
| VLDRAKSMYE RDKNHASVLI WSCGNESYCG EDIAAMSEYF RSADPTRLVH YEGVTRVPDN | 480 |
| QYDFITDMES RMYAKPQEVE EYLKQNSGRP YISCEYMHAM GNSLGGLSLY TDLEDKYEAY | 540 |
| QGGFIWDYID QAIETQNDDG KTVLAYGGDF EDRPSDYGFC TNGVIYADRT YSPKVQEMKA | 600 |
| LYSNIRMSIQ NGMLTVENRN LFADTNNLSF VVRLEKNGVV LKSDTFSLNV PAGESKTKKL | 660 |
| TLHKIDSVGE YVYHVSAVTA DQTLWADAGH EIAFAQEVFE VKDNQIPETT LQKPTIVYSD | 720 |
| VIIGVHGENF SMMFDKKEGG ISSLKYNDYE YITRTPKVSF WRAMTDNDTG ASEPYNLAQW | 780 |
| YVAGKFAKYK TVSWLEQEDA LKITFTYQAA CIPTFEFTVT YTAHFDGKLG VSVNYAGVSG | 840 |
| MSDMPILALD FKMKKQLCNF QYYGLGPDEN YSDRCKGARL GLWKSTAKEN LSGYLNPQEC | 900 |
| GNRTGVRTLS VHDDMQHGLT FQKASAPFEM NVLPYSAYEL ENAMHPDELP SVRYTWVRIA | 960 |
| AKQMGVGGDD SWGAPVHEEY RIHADQPMKL EFVIMPLRS | 999 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.