CAZyme3D

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Entry ID

Information for CAZyme ID: CBH25548.1

Basic Information

GenBank IDCBH25548.1
FamilyGT2
Sequence Length337
UniProt IDD5HBZ3(100,100)Download
Average pLDDT?79.51
CAZy50 ID138223
CAZy50 RepYes, CBH25548.1
Structure ClusterSC_GT2_clus545
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID761659
KingdomBacteria
PhylumRhodothermota
ClassRhodothermia
OrderRhodothermales
FamilySalinibacteraceae
GenusSalinibacter
SpeciesSalinibacter ruber

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEAPAPQHSP  PDSRTPDLSI  VVPAYEEAQS  LPELADGVRA  VCEEAGLSFR  LWIIDDGSRD60
ETWEVVRGLC  EDDPRVAGVR  FRRNYGKSAA  LAVGFDRVQG  RYVATMDADL  QDDPDEIPAL120
IDKLEEGGHD  LVSGWKKDRK  DPLRKTLPSR  FFNWVTRLFS  GLPLHDFNCG  LKVYRRPVVK180
SIDVYGELHR  YIPLLAKWEG  YDRVAEKEVQ  HHPRKYGTTK  FGVERFIQGF  LDLITVVFLT240
RYAVRPMHFF  GSMGTVAFAL  GFLVSLWLSF  DKLVLGHPIG  DRPLLLFGVL  LILFGSQMFT300
TGLLGEMIIR  PRMEDPSTYE  VAEATGLADE  AADVLEG337

Predicted 3D structure by AlphaFold2 with pLDDT = 79.51 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEAPAPQHSP  PDSRTPDLSI  VVPAYEEAQS  LPELADGVRA  VCEEAGLSFR  LWIIDDGSRD60
ETWEVVRGLC  EDDPRVAGVR  FRRNYGKSAA  LAVGFDRVQG  RYVATMDADL  QDDPDEIPAL120
IDKLEEGGHD  LVSGWKKDRK  DPLRKTLPSR  FFNWVTRLFS  GLPLHDFNCG  LKVYRRPVVK180
SIDVYGELHR  YIPLLAKWEG  YDRVAEKEVQ  HHPRKYGTTK  FGVERFIQGF  LDLITVVFLT240
RYAVRPMHFF  GSMGTVAFAL  GFLVSLWLSF  DKLVLGHPIG  DRPLLLFGVL  LILFGSQMFT300
TGLLGEMIIR  PRMEDPSTYE  VAEATGLADE  AADVLEG337

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(19-176)

MEAPAPQHSP  PDSRTPDLSI  VVPAYEEAQS  LPELADGVRA  VCEEAGLSFR  LWIIDDGSRD60
ETWEVVRGLC  EDDPRVAGVR  FRRNYGKSAA  LAVGFDRVQG  RYVATMDADL  QDDPDEIPAL120
IDKLEEGGHD  LVSGWKKDRK  DPLRKTLPSR  FFNWVTRLFS  GLPLHDFNCG  LKVYRRPVVK180
SIDVYGELHR  YIPLLAKWEG  YDRVAEKEVQ  HHPRKYGTTK  FGVERFIQGF  LDLITVVFLT240
RYAVRPMHFF  GSMGTVAFAL  GFLVSLWLSF  DKLVLGHPIG  DRPLLLFGVL  LILFGSQMFT300
TGLLGEMIIR  PRMEDPSTYE  VAEATGLADE  AADVLEG337

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help