CAZyme3D

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Entry ID

Information for CAZyme ID: CAX72955.1

Basic Information

GenBank IDCAX72955.1
FamilyGT31
Sequence Length357
UniProt IDC1LE27(100,100)Download
Average pLDDT?77.39
CAZy50 ID128253
CAZy50 RepYes, CAX72955.1
Structure ClusterSC_GT31_clus100
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID6182
KingdomEukaryota
PhylumPlatyhelminthes
ClassTrematoda
OrderStrigeidida
FamilySchistosomatidae
GenusSchistosoma
SpeciesSchistosoma japonicum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIIKKLGALN  WLVYTLSMLR  LNDVKLFSVG  LGVTLLLKWF  ANFSGTPEVK  CLSDGTLVHT60
EKCSLFSLTD  VGYSEYLAKK  INIYCYILTE  PQEHFSRAYH  VQTTWARRCT  RYSFVSFKEE120
KLIKMLAVKR  SQKYIKNSWI  SMRETLRALH  NQTYKAPYFL  KADDATYVIM  ENLRNALEYT180
NPRIPFIMGH  VYEVSPNEFT  LSGSFGYVMS  KAALELIVLK  GLDQLTECGP  IKNVREDVQI240
SKCAKALGIQ  LKDSIDMFGM  SRFSNISITN  LFGAINNGNN  TDRILRWNPT  ETDYTQSVYD300
FKKLPASPLL  ISFGGLIPVR  MYVLEYLIYH  LRPIGITHTI  LQNRSYSSVM  NRVHVTN357

Predicted 3D structure by AlphaFold2 with pLDDT = 77.39 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIIKKLGALN  WLVYTLSMLR  LNDVKLFSVG  LGVTLLLKWF  ANFSGTPEVK  CLSDGTLVHT60
EKCSLFSLTD  VGYSEYLAKK  INIYCYILTE  PQEHFSRAYH  VQTTWARRCT  RYSFVSFKEE120
KLIKMLAVKR  SQKYIKNSWI  SMRETLRALH  NQTYKAPYFL  KADDATYVIM  ENLRNALEYT180
NPRIPFIMGH  VYEVSPNEFT  LSGSFGYVMS  KAALELIVLK  GLDQLTECGP  IKNVREDVQI240
SKCAKALGIQ  LKDSIDMFGM  SRFSNISITN  LFGAINNGNN  TDRILRWNPT  ETDYTQSVYD300
FKKLPASPLL  ISFGGLIPVR  MYVLEYLIYH  LRPIGITHTI  LQNRSYSSVM  NRVHVTN357

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT31(135-253)

MIIKKLGALN  WLVYTLSMLR  LNDVKLFSVG  LGVTLLLKWF  ANFSGTPEVK  CLSDGTLVHT60
EKCSLFSLTD  VGYSEYLAKK  INIYCYILTE  PQEHFSRAYH  VQTTWARRCT  RYSFVSFKEE120
KLIKMLAVKR  SQKYIKNSWI  SMRETLRALH  NQTYKAPYFL  KADDATYVIM  ENLRNALEYT180
NPRIPFIMGH  VYEVSPNEFT  LSGSFGYVMS  KAALELIVLK  GLDQLTECGP  IKNVREDVQI240
SKCAKALGIQ  LKDSIDMFGM  SRFSNISITN  LFGAINNGNN  TDRILRWNPT  ETDYTQSVYD300
FKKLPASPLL  ISFGGLIPVR  MYVLEYLIYH  LRPIGITHTI  LQNRSYSSVM  NRVHVTN357

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help