CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: CAW54737.1

Basic Information

GenBank IDCAW54737.1
FamilyGT31
Sequence Length614
UniProt IDO81745(100,100)Download
Average pLDDT?65.99
CAZy50 ID50410
CAZy50 RepYes, CAW54737.1
Structure ClusterSC_GT31_clus1
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFNTSCFKKK  KIFGKVVRTI  VPKKPVNENI  SESETMKKME  ETVEPMVALS  RPPPFSPFVG60
PKKFDIGFVF  LLTLFIWTRS  LQQKITKSIL  LNHKLQMSNT  KIVVVTIIYH  LLQQQQTNHC120
EKNKIWMKGN  QKDSSEKPIW  DRSSSSTSIP  GMWSLTRPGP  KLMLVSTSRS  CDDSTSFTTV180
SALSTNVSSN  VSSLSTSLAS  RRRNWEEEEE  DTVVDKLTDL  NHVVFGIAAS  SKLWKQRKEY240
IKIWYKPKRM  RGYVWLDKEV  KKSLSDDDDE  KLLPPVKISG  GTASFPYTNK  QGQRSALRIS300
RIVSETLRLG  PKNVRWFVMG  DDDTMYYIGS  LSESHLQNIF  FSYGMAYGGG  GFAISYPLAK360
ALSKMQDRCI  QRYPALYGSD  DRMQACMAEL  GVPLTKELGF  HQYDVYGNLF  GLLAAHPVTP420
FVSMHHLDVV  EPIFPNMTRV  RALKKITEPM  KLDSAGLLQQ  SICYDKHKSW  TISVSWGYAV480
QIFRGIFSPR  EMEMPSRTFL  NWYKRADYTA  YAFNTRPVSR  NPCQKPFVFY  MSSTKFDQQL540
NTTVSEYTIH  RVSHPSCRWK  MTNPAEINTI  VVYKKPDPHL  WERVSKISSL  LAYDLYVINV600
MYLIVFVCVL  CTVT614

Predicted 3D structure by AlphaFold2 with pLDDT = 65.99 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MFNTSCFKKK  KIFGKVVRTI  VPKKPVNENI  SESETMKKME  ETVEPMVALS  RPPPFSPFVG60
PKKFDIGFVF  LLTLFIWTRS  LQQKITKSIL  LNHKLQMSNT  KIVVVTIIYH  LLQQQQTNHC120
EKNKIWMKGN  QKDSSEKPIW  DRSSSSTSIP  GMWSLTRPGP  KLMLVSTSRS  CDDSTSFTTV180
SALSTNVSSN  VSSLSTSLAS  RRRNWEEEEE  DTVVDKLTDL  NHVVFGIAAS  SKLWKQRKEY240
IKIWYKPKRM  RGYVWLDKEV  KKSLSDDDDE  KLLPPVKISG  GTASFPYTNK  QGQRSALRIS300
RIVSETLRLG  PKNVRWFVMG  DDDTMYYIGS  LSESHLQNIF  FSYGMAYGGG  GFAISYPLAK360
ALSKMQDRCI  QRYPALYGSD  DRMQACMAEL  GVPLTKELGF  HQYDVYGNLF  GLLAAHPVTP420
FVSMHHLDVV  EPIFPNMTRV  RALKKITEPM  KLDSAGLLQQ  SICYDKHKSW  TISVSWGYAV480
QIFRGIFSPR  EMEMPSRTFL  NWYKRADYTA  YAFNTRPVSR  NPCQKPFVFY  MSSTKFDQQL540
NTTVSEYTIH  RVSHPSCRWK  MTNPAEINTI  VVYKKPDPHL  WERVSKISSL  LAYDLYVINV600
MYLIVFVCVL  CTVT614

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MFNTSCFKKK  KIFGKVVRTI  VPKKPVNENI  SESETMKKME  ETVEPMVALS  RPPPFSPFVG60
PKKFDIGFVF  LLTLFIWTRS  LQQKITKSIL  LNHKLQMSNT  KIVVVTIIYH  LLQQQQTNHC120
EKNKIWMKGN  QKDSSEKPIW  DRSSSSTSIP  GMWSLTRPGP  KLMLVSTSRS  CDDSTSFTTV180
SALSTNVSSN  VSSLSTSLAS  RRRNWEEEEE  DTVVDKLTDL  NHVVFGIAAS  SKLWKQRKEY240
IKIWYKPKRM  RGYVWLDKEV  KKSLSDDDDE  KLLPPVKISG  GTASFPYTNK  QGQRSALRIS300
RIVSETLRLG  PKNVRWFVMG  DDDTMYYIGS  LSESHLQNIF  FSYGMAYGGG  GFAISYPLAK360
ALSKMQDRCI  QRYPALYGSD  DRMQACMAEL  GVPLTKELGF  HQYDVYGNLF  GLLAAHPVTP420
FVSMHHLDVV  EPIFPNMTRV  RALKKITEPM  KLDSAGLLQQ  SICYDKHKSW  TISVSWGYAV480
QIFRGIFSPR  EMEMPSRTFL  NWYKRADYTA  YAFNTRPVSR  NPCQKPFVFY  MSSTKFDQQL540
NTTVSEYTIH  RVSHPSCRWK  MTNPAEINTI  VVYKKPDPHL  WERVSKISSL  LAYDLYVINV600
MYLIVFVCVL  CTVT614

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help