CAZyme3D

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Entry ID

Information for CAZyme ID: CAN80849.1

Basic Information

GenBank IDCAN80849.1
FamilyCBM48
Sequence Length452
UniProt IDA5B6N2(100,100)Download
Average pLDDT?78.78
CAZy50 ID79531
CAZy50 RepYes, CAN80849.1
Structure ClusterSC_CBM48_clus10
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID29760
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderVitales
FamilyVitaceae
GenusVitis
SpeciesVitis vinifera

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGKEFGSGKI  CGGGTNLWDP  NIQVFPSKFV  WNSQIPFKVQ  SFIRLVAHKK  VNTNDMLQVR60
RPYKALSPDI  CILCMKHGES  ADHIFLHCSL  TIGLWNRLFQ  LAKMDWVPPR  SILDMMYIKF120
NGFGSSKRGI  ALWQAANIAL  IRIVWRERNA  RIFEDKARNL  EFIWDSIVFL  ASLWAYCSKD180
CTGSLLSSVA  SSTKIAFYLF  CFSWSWVFIS  PFSRIYCRSG  XGQCNNVTGL  QLPGVLDELF240
SYEGPLGAIF  SKEAVTLYLW  APTAQVVHAC  IYGDPSGGDP  LEIVCLEEFN  GVWSASGPKS300
WEGCYYEYEV  SVYHPSTLQI  EKCTANDPYA  RGLSADXRRT  LLVNLDSDDL  KPEGWDNLAD360
EKPALLSFSD  ISIYELHIRD  FSASDHTVHP  DFRGGYLAFT  SQDSAGILHL  KKLCNAGISH420
LHLLPTFQFA  GVDDEKDKWK  CVGKFLISTS  DI452

Predicted 3D structure by AlphaFold2 with pLDDT = 78.78 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MGKEFGSGKI  CGGGTNLWDP  NIQVFPSKFV  WNSQIPFKVQ  SFIRLVAHKK  VNTNDMLQVR60
RPYKALSPDI  CILCMKHGES  ADHIFLHCSL  TIGLWNRLFQ  LAKMDWVPPR  SILDMMYIKF120
NGFGSSKRGI  ALWQAANIAL  IRIVWRERNA  RIFEDKARNL  EFIWDSIVFL  ASLWAYCSKD180
CTGSLLSSVA  SSTKIAFYLF  CFSWSWVFIS  PFSRIYCRSG  XGQCNNVTGL  QLPGVLDELF240
SYEGPLGAIF  SKEAVTLYLW  APTAQVVHAC  IYGDPSGGDP  LEIVCLEEFN  GVWSASGPKS300
WEGCYYEYEV  SVYHPSTLQI  EKCTANDPYA  RGLSADXRRT  LLVNLDSDDL  KPEGWDNLAD360
EKPALLSFSD  ISIYELHIRD  FSASDHTVHP  DFRGGYLAFT  SQDSAGILHL  KKLCNAGISH420
LHLLPTFQFA  GVDDEKDKWK  CVGKFLISTS  DI452

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM48(244-332)

MGKEFGSGKI  CGGGTNLWDP  NIQVFPSKFV  WNSQIPFKVQ  SFIRLVAHKK  VNTNDMLQVR60
RPYKALSPDI  CILCMKHGES  ADHIFLHCSL  TIGLWNRLFQ  LAKMDWVPPR  SILDMMYIKF120
NGFGSSKRGI  ALWQAANIAL  IRIVWRERNA  RIFEDKARNL  EFIWDSIVFL  ASLWAYCSKD180
CTGSLLSSVA  SSTKIAFYLF  CFSWSWVFIS  PFSRIYCRSG  GQCNNVTGLQ  LPGVLDELFS240
YEGPLGAIFS  KEAVTLYLWA  PTAQVVHACI  YGDPSGGDPL  EIVCLEEFNG  VWSASGPKSW300
EGCYYEYEVS  VYHPSTLQIE  KCTANDPYAR  GLSADRRTLL  VNLDSDDLKP  EGWDNLADEK360
PALLSFSDIS  IYELHIRDFS  ASDHTVHPDF  RGGYLAFTSQ  DSAGILHLKK  LCNAGISHLH420
LLPTFQFAGV  DDEKDKWKCV  GKFLISTSDI  450

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help