CAZyme3D

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Entry ID

Information for CAZyme ID: CAK48049.1

Basic Information

GenBank IDCAK48049.1
FamilyGH5_23
Sequence Length413
UniProt IDA2QLQ4(100,100)Download
Average pLDDT?77.61
CAZy50 ID92439
CAZy50 RepYes, CAK48049.1
Structure ClusterSC_GH5_clus159
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID5061
KingdomEukaryota
PhylumAscomycota
ClassEurotiomycetes
OrderEurotiales
FamilyAspergillaceae
GenusAspergillus
SpeciesAspergillus niger

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVKLLPTFLL  QAGFALAAVE  YLNWTTYIAN  DIDTLANAGV  NTLRIPTTYA  AWVKVPGSQL60
YSGNQVSFLN  NIATYAITRY  SMHIIIDVHS  LPGGVNGKAF  GEATGHYGWF  NNQTALDYSL120
QAIDSVIAYI  QNSSNPGSYT  IEPINEPVDN  KDMSAFGSPE  ALSDEGAAWV  LKYIQAVLDK180
VEVISPDIPV  MFQGSFRGEE  YWSPNFSTSA  NLVFDVHNYY  FAGRGATGKN  ITTYICADAK240
NGAGDGKFPV  FVGEWSIQAQ  YNNSFADRDE  ALNTGLYASA  KDSQGSAYWN  AKFSGNATVD300
GQGTQADYWN  YMTWIDNDMI  HPDEASGTTL  LAIDLFLFWF  RESYCCALSN  TGLVSSQLSS360
SNLIRPKVPT  AVNAYHMTRA  LLSPLDAKRR  LSLRTDKSQP  GPIQLWLESY  RRV413

Predicted 3D structure by AlphaFold2 with pLDDT = 77.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVKLLPTFLL  QAGFALAAVE  YLNWTTYIAN  DIDTLANAGV  NTLRIPTTYA  AWVKVPGSQL60
YSGNQVSFLN  NIATYAITRY  SMHIIIDVHS  LPGGVNGKAF  GEATGHYGWF  NNQTALDYSL120
QAIDSVIAYI  QNSSNPGSYT  IEPINEPVDN  KDMSAFGSPE  ALSDEGAAWV  LKYIQAVLDK180
VEVISPDIPV  MFQGSFRGEE  YWSPNFSTSA  NLVFDVHNYY  FAGRGATGKN  ITTYICADAK240
NGAGDGKFPV  FVGEWSIQAQ  YNNSFADRDE  ALNTGLYASA  KDSQGSAYWN  AKFSGNATVD300
GQGTQADYWN  YMTWIDNDMI  HPDEASGTTL  LAIDLFLFWF  RESYCCALSN  TGLVSSQLSS360
SNLIRPKVPT  AVNAYHMTRA  LLSPLDAKRR  LSLRTDKSQP  GPIQLWLESY  RRV413

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_23(24-302)

MVKLLPTFLL  QAGFALAAVE  YLNWTTYIAN  DIDTLANAGV  NTLRIPTTYA  AWVKVPGSQL60
YSGNQVSFLN  NIATYAITRY  SMHIIIDVHS  LPGGVNGKAF  GEATGHYGWF  NNQTALDYSL120
QAIDSVIAYI  QNSSNPGSYT  IEPINEPVDN  KDMSAFGSPE  ALSDEGAAWV  LKYIQAVLDK180
VEVISPDIPV  MFQGSFRGEE  YWSPNFSTSA  NLVFDVHNYY  FAGRGATGKN  ITTYICADAK240
NGAGDGKFPV  FVGEWSIQAQ  YNNSFADRDE  ALNTGLYASA  KDSQGSAYWN  AKFSGNATVD300
GQGTQADYWN  YMTWIDNDMI  HPDEASGTTL  LAIDLFLFWF  RESYCCALSN  TGLVSSQLSS360
SNLIRPKVPT  AVNAYHMTRA  LLSPLDAKRR  LSLRTDKSQP  GPIQLWLESY  RRV413

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help