Information for CAZyme ID: CAK07903.1
Basic Information
| GenBank ID | CAK07903.1 |
| Family | GH13 |
| Sequence Length | 790 |
| UniProt ID | Q1MGL6(100,100) |
| Average pLDDT? | 91.94 |
| CAZy50 ID | 28346 |
| CAZy50 Rep | Yes, CAK07903.1 |
| Structure Cluster | SC_GH13_clus130 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 216596 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Rhizobium |
| Species | Rhizobium johnstonii |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MTVNVQFRFR SGLPLMAFDN VRLRGSWDEQ GHPANGWTSH PMQRSRDEDG YDVFVARVPF | 60 |
| PDGEIGTHFR WGIELDRPGI PDLWAIAAEL DDEASSRREC SFDLQQGIGP QTYYLTWIGR | 120 |
| LGANRVEKRN SADGIRFSVW APNARAVSLV LADPAVGYIA DDGTGTIATI GMRRTVDGFW | 180 |
| SVETGEDHDL ADFDSMVGTP YMYRITRDDG SLAYRTDIWS LMQIGAGDFD PDGAAYHGPP | 240 |
| AALDGPQSCS VVCDPKRVVL PSGEEVAAET FWADEFVGGR TLPERLEDLV IYELHVGALG | 300 |
| FGKATPGTLD DAIAFVEHLS ALGVNAVELL PIAEFETRAN WGYGTSHFFA ADQGAGGTDR | 360 |
| LKMFVKACHR RGIAVILDVC YNHFDPDGER AQWAYDSNDH TRNIYYWYEG RPGDYADPTG | 420 |
| GYIDNISTGW APRFHEEAVR QLFISSAAFL VSVCHIDGFR LDQTSSIHQY PVVHADGRRA | 480 |
| DRAAASGAKF LKQWTRTMRL IKPQLFLTAE DYSDWSAMTE PSLTGDGLGF DATWYGDFHH | 540 |
| NLVEYHRGAQ AQLLKNAGFG DKRALTMSSL AGALQTSARS KVVYNQSHDD CGNREGSART | 600 |
| TVIAVNFAPV VGETRAWAEA RSRFAAAMTL LSPGTPMFFM GEEIGAQKPY RYNDFLDNRE | 660 |
| NILGEADGSG AAMISCYRDL IALSVQQDAI RSRNIAIPLV HDENRVIAFH RWNDGEDFLV | 720 |
| VGSLNDAPFE HGYRLYSERL GDDLWEEIFN TDAQIYGGWN VGNGGGRIRA TAGVLNAVLP | 780 |
| ASGVLVFRKL | 790 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.94 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MTVNVQFRFR SGLPLMAFDN VRLRGSWDEQ GHPANGWTSH PMQRSRDEDG YDVFVARVPF | 60 |
| PDGEIGTHFR WGIELDRPGI PDLWAIAAEL DDEASSRREC SFDLQQGIGP QTYYLTWIGR | 120 |
| LGANRVEKRN SADGIRFSVW APNARAVSLV LADPAVGYIA DDGTGTIATI GMRRTVDGFW | 180 |
| SVETGEDHDL ADFDSMVGTP YMYRITRDDG SLAYRTDIWS LMQIGAGDFD PDGAAYHGPP | 240 |
| AALDGPQSCS VVCDPKRVVL PSGEEVAAET FWADEFVGGR TLPERLEDLV IYELHVGALG | 300 |
| FGKATPGTLD DAIAFVEHLS ALGVNAVELL PIAEFETRAN WGYGTSHFFA ADQGAGGTDR | 360 |
| LKMFVKACHR RGIAVILDVC YNHFDPDGER AQWAYDSNDH TRNIYYWYEG RPGDYADPTG | 420 |
| GYIDNISTGW APRFHEEAVR QLFISSAAFL VSVCHIDGFR LDQTSSIHQY PVVHADGRRA | 480 |
| DRAAASGAKF LKQWTRTMRL IKPQLFLTAE DYSDWSAMTE PSLTGDGLGF DATWYGDFHH | 540 |
| NLVEYHRGAQ AQLLKNAGFG DKRALTMSSL AGALQTSARS KVVYNQSHDD CGNREGSART | 600 |
| TVIAVNFAPV VGETRAWAEA RSRFAAAMTL LSPGTPMFFM GEEIGAQKPY RYNDFLDNRE | 660 |
| NILGEADGSG AAMISCYRDL IALSVQQDAI RSRNIAIPLV HDENRVIAFH RWNDGEDFLV | 720 |
| VGSLNDAPFE HGYRLYSERL GDDLWEEIFN TDAQIYGGWN VGNGGGRIRA TAGVLNAVLP | 780 |
| ASGVLVFRKL | 790 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.