CAZyme3D

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Entry ID

Information for CAZyme ID: CAI09619.1

Basic Information

GenBank IDCAI09619.1
FamilyGH17, GT2
Sequence Length905
UniProt IDQ5NZ95(100,100)Download
Average pLDDT?88.80
CAZy50 ID19085
CAZy50 RepYes, CAI09619.1
Structure ClusterSC_GH17_clus27, SC_GT2_clus447
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID76114
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderRhodocyclales
FamilyRhodocyclaceae
GenusAromatoleum
SpeciesAromatoleum aromaticum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKYAASLIYR  LIVALILAGL  VAGAQYLFAE  RWNRGTEFIG  AGNSIRGYAY  SPFQRDQSPL60
KGTYPNEAEI  AADLDLLAQT  GERIRTYGST  EVPAIVRLAG  ERRLTVTAGA  WLSPDPEAND120
REIDALIESA  REMRHIERVI  VGNEVLLRGD  LSVAELSTYL  DKVRKALRRP  KVPVSTAEPW180
HVWLKHPELA  KSVDFITVHL  LPYHEGVPVE  SAVEYVLMRY  DELAKAFPKK  KIVIGEVGWP240
SRGPVMNSFG  AEETTSVPSV  ENEARFIREF  LAHPRSPTLD  YFIMEAIDQP  WKIQLEGWAG300
AYWGMFNAER  QAKFPLEGLV  VQDIRWHEKA  RMAALIALVP  MFLICFLLRD  WSILGRLWLS360
ALIQACAVTL  VIGANVPADY  YLTQRDLIGL  AMLIGATVLT  IAVLLSHGFE  FGEVLFKRRW420
KRRFLPLTPL  AAEREPFVSI  HLACCNEPPE  MVIATIDSLA  AMNYGNFEVL  VLDNNTKDEA480
LWKPLEARCA  ELGSRFRFFH  LENWPGFKAG  ALNFGLKQTD  PRAEVVGVVD  ADYVVSPDWL540
SCLIPHFDAA  DVAVVQAPQA  HRDWETQPFR  RMCNWEFEGF  FRIGMHHRNE  RNALIQHGTM600
TLVRRLALEE  VGGWSEWCIC  EDTELGLRLI  EKGYDTRYVD  HILGRGLTPS  DFAAIKSQRF660
RWAFGAMQIL  KHHLPAMIGP  SRLNIAQRYH  FLTGWFAWLG  DALQLVFVFA  SLAWTIGMLY720
MPQEFGLPVS  ALALPILVFM  AFKGGLGPIL  YRRTMDAPWK  DILGASILSV  GMAHAIARGV780
FAGLVKKRGE  FVRTPKGWKD  KGTLAFFSPI  REEIGLLLAL  VLGSVVLVWL  RGAQDLEAQL840
WVGILALQCI  PYLAAIACQA  ASYMPERPAT  TVEPAPETRP  SASVTPIEEA  SVTPIVEVEA900
MRAGG905

Predicted 3D structure by AlphaFold2 with pLDDT = 88.80 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKYAASLIYR  LIVALILAGL  VAGAQYLFAE  RWNRGTEFIG  AGNSIRGYAY  SPFQRDQSPL60
KGTYPNEAEI  AADLDLLAQT  GERIRTYGST  EVPAIVRLAG  ERRLTVTAGA  WLSPDPEAND120
REIDALIESA  REMRHIERVI  VGNEVLLRGD  LSVAELSTYL  DKVRKALRRP  KVPVSTAEPW180
HVWLKHPELA  KSVDFITVHL  LPYHEGVPVE  SAVEYVLMRY  DELAKAFPKK  KIVIGEVGWP240
SRGPVMNSFG  AEETTSVPSV  ENEARFIREF  LAHPRSPTLD  YFIMEAIDQP  WKIQLEGWAG300
AYWGMFNAER  QAKFPLEGLV  VQDIRWHEKA  RMAALIALVP  MFLICFLLRD  WSILGRLWLS360
ALIQACAVTL  VIGANVPADY  YLTQRDLIGL  AMLIGATVLT  IAVLLSHGFE  FGEVLFKRRW420
KRRFLPLTPL  AAEREPFVSI  HLACCNEPPE  MVIATIDSLA  AMNYGNFEVL  VLDNNTKDEA480
LWKPLEARCA  ELGSRFRFFH  LENWPGFKAG  ALNFGLKQTD  PRAEVVGVVD  ADYVVSPDWL540
SCLIPHFDAA  DVAVVQAPQA  HRDWETQPFR  RMCNWEFEGF  FRIGMHHRNE  RNALIQHGTM600
TLVRRLALEE  VGGWSEWCIC  EDTELGLRLI  EKGYDTRYVD  HILGRGLTPS  DFAAIKSQRF660
RWAFGAMQIL  KHHLPAMIGP  SRLNIAQRYH  FLTGWFAWLG  DALQLVFVFA  SLAWTIGMLY720
MPQEFGLPVS  ALALPILVFM  AFKGGLGPIL  YRRTMDAPWK  DILGASILSV  GMAHAIARGV780
FAGLVKKRGE  FVRTPKGWKD  KGTLAFFSPI  REEIGLLLAL  VLGSVVLVWL  RGAQDLEAQL840
WVGILALQCI  PYLAAIACQA  ASYMPERPAT  TVEPAPETRP  SASVTPIEEA  SVTPIVEVEA900
MRAGG905

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(436-665)

MKYAASLIYR  LIVALILAGL  VAGAQYLFAE  RWNRGTEFIG  AGNSIRGYAY  SPFQRDQSPL60
KGTYPNEAEI  AADLDLLAQT  GERIRTYGST  EVPAIVRLAG  ERRLTVTAGA  WLSPDPEAND120
REIDALIESA  REMRHIERVI  VGNEVLLRGD  LSVAELSTYL  DKVRKALRRP  KVPVSTAEPW180
HVWLKHPELA  KSVDFITVHL  LPYHEGVPVE  SAVEYVLMRY  DELAKAFPKK  KIVIGEVGWP240
SRGPVMNSFG  AEETTSVPSV  ENEARFIREF  LAHPRSPTLD  YFIMEAIDQP  WKIQLEGWAG300
AYWGMFNAER  QAKFPLEGLV  VQDIRWHEKA  RMAALIALVP  MFLICFLLRD  WSILGRLWLS360
ALIQACAVTL  VIGANVPADY  YLTQRDLIGL  AMLIGATVLT  IAVLLSHGFE  FGEVLFKRRW420
KRRFLPLTPL  AAEREPFVSI  HLACCNEPPE  MVIATIDSLA  AMNYGNFEVL  VLDNNTKDEA480
LWKPLEARCA  ELGSRFRFFH  LENWPGFKAG  ALNFGLKQTD  PRAEVVGVVD  ADYVVSPDWL540
SCLIPHFDAA  DVAVVQAPQA  HRDWETQPFR  RMCNWEFEGF  FRIGMHHRNE  RNALIQHGTM600
TLVRRLALEE  VGGWSEWCIC  EDTELGLRLI  EKGYDTRYVD  HILGRGLTPS  DFAAIKSQRF660
RWAFGAMQIL  KHHLPAMIGP  SRLNIAQRYH  FLTGWFAWLG  DALQLVFVFA  SLAWTIGMLY720
MPQEFGLPVS  ALALPILVFM  AFKGGLGPIL  YRRTMDAPWK  DILGASILSV  GMAHAIARGV780
FAGLVKKRGE  FVRTPKGWKD  KGTLAFFSPI  REEIGLLLAL  VLGSVVLVWL  RGAQDLEAQL840
WVGILALQCI  PYLAAIACQA  ASYMPERPAT  TVEPAPETRP  SASVTPIEEA  SVTPIVEVEA900
MRAGG905

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help