CAZyme3D

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Entry ID

Information for CAZyme ID: CAG1837745.1

Basic Information

GenBank IDCAG1837745.1
FamilyCE13
Sequence Length447
UniProt IDA0A8D7F0E4(100,100)Download
Average pLDDT?88.47
CAZy50 ID80742
CAZy50 RepYes, CAG1837745.1
Structure ClusterSC_CE13_clus18
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID214687
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderZingiberales
FamilyMusaceae
GenusMusa
SpeciesMusa acuminata

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAMGDVHQLQ  LWWRRRWGTE  RRATVAWVFA  ALFIVLFLAA  GSRLGDTALG  GTGTLARSSS60
DPALVDLTLV  RDAEEKGAVC  LDGSPPGYHL  QRGFGSGVDS  WLVHLEGGGW  CSSLESCSLR120
KSTPVGSSHH  MERQVPFVGI  LSNIPSQNPD  FHNWNKVKVR  YCDGASYSGE  GESETQDGTK180
LFFRGQRIWK  AIMGELLQKG  LANAKQALLT  GCSAGGLATF  IHCDEFRELL  PKEITVKCFA240
DAGFFLNEKD  ISGKSYIQSF  YSNVVRLQDV  GKKFPDCISR  MEPSQAGDCD  YLPYHKSCFF300
AEEIIKNVKT  PLFILNPAYD  SWQIQNIFVP  ASSDPQQSWQ  RCKLNIHNCD  SNQIKSLQGF360
RYALLNALSE  FKKNNNGGMF  INSCFVHCQT  IYNFTWHSSN  SPRVNNKTLA  EAVGDWYFGR420
AKVQEIDCAY  PCNPTCHHLN  LMQPYRM447

Predicted 3D structure by AlphaFold2 with pLDDT = 88.47 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MAMGDVHQLQ  LWWRRRWGTE  RRATVAWVFA  ALFIVLFLAA  GSRLGDTALG  GTGTLARSSS60
DPALVDLTLV  RDAEEKGAVC  LDGSPPGYHL  QRGFGSGVDS  WLVHLEGGGW  CSSLESCSLR120
KSTPVGSSHH  MERQVPFVGI  LSNIPSQNPD  FHNWNKVKVR  YCDGASYSGE  GESETQDGTK180
LFFRGQRIWK  AIMGELLQKG  LANAKQALLT  GCSAGGLATF  IHCDEFRELL  PKEITVKCFA240
DAGFFLNEKD  ISGKSYIQSF  YSNVVRLQDV  GKKFPDCISR  MEPSQAGDCD  YLPYHKSCFF300
AEEIIKNVKT  PLFILNPAYD  SWQIQNIFVP  ASSDPQQSWQ  RCKLNIHNCD  SNQIKSLQGF360
RYALLNALSE  FKKNNNGGMF  INSCFVHCQT  IYNFTWHSSN  SPRVNNKTLA  EAVGDWYFGR420
AKVQEIDCAY  PCNPTCHHLN  LMQPYRM447

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE13(62-424)

MAMGDVHQLQ  LWWRRRWGTE  RRATVAWVFA  ALFIVLFLAA  GSRLGDTALG  GTGTLARSSS60
DPALVDLTLV  RDAEEKGAVC  LDGSPPGYHL  QRGFGSGVDS  WLVHLEGGGW  CSSLESCSLR120
KSTPVGSSHH  MERQVPFVGI  LSNIPSQNPD  FHNWNKVKVR  YCDGASYSGE  GESETQDGTK180
LFFRGQRIWK  AIMGELLQKG  LANAKQALLT  GCSAGGLATF  IHCDEFRELL  PKEITVKCFA240
DAGFFLNEKD  ISGKSYIQSF  YSNVVRLQDV  GKKFPDCISR  MEPSQAGDCD  YLPYHKSCFF300
AEEIIKNVKT  PLFILNPAYD  SWQIQNIFVP  ASSDPQQSWQ  RCKLNIHNCD  SNQIKSLQGF360
RYALLNALSE  FKKNNNGGMF  INSCFVHCQT  IYNFTWHSSN  SPRVNNKTLA  EAVGDWYFGR420
AKVQEIDCAY  PCNPTCHHLN  LMQPYRM447

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help