CAZyme3D

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Entry ID

Information for CAZyme ID: CAF22222.1

Basic Information

GenBank IDCAF22222.1
FamilyCBM11, GH51
Sequence Length634
UniProt IDQ5NJL7(100,100)Download
Average pLDDT?91.18
CAZy50 ID47482
CAZy50 RepYes, CAF22222.1
Structure ClusterSC_CBM11_clus4, SC_GH51_clus21
EC Number(s)3.2.1.4
Substrates(s)beta-glucan

Taxonomy

Tax ID77133
KingdomBacteria
Phylum
Class
Order
Family
Genus
Speciesuncultured bacterium
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/Q5NJL7.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNENRVGDGN  PVILYVYDVK  FIEEIPGYVC  PEEFWGAFES  DAPDLQLHDF  ATEQDRNWET60
STGPKSSGSF  EFVEAAPEES  EGYSIKISYS  LHDWVDIIYN  YRDNNSPAEH  RDWTNHWGLK120
FDVYTERAFQ  PFNVQVNDSG  NELWIATAGA  EKGWTEVIVA  FRDFYKFPHW  QPPDAVHTGN180
FDIENVIALD  FKPSGEGTSA  QFKVHNVRLT  NDREARRAPV  PEYVAVNVTG  SFDEVVTEQI240
NEGIFGINAA  LWDGDLLLPE  TVEYVKAVNH  HVLRYPGGLR  ADDDNWKEVL  AAQDWMVDTD300
QFLEFCRATN  TEAMITVNFG  SGTVEDAADW  VRHHNVENDD  NVRYWEVGNE  LYGDWHPFQT360
TAEDYGKRTR  EFIIAMKEVD  PTIKVTFVGV  LDGEWNRIVL  EHVKDVADGI  NVHHYPQTTG420
EENDAGLLSS  PQTLDDIIPS  VRRQLAEWGE  PGREYEIWLT  EWNSVDFEPG  PQTLSIVNGL480
FVADYLGMLA  KHNIEQASYW  DIHNDITDQG  GDYGYLSRTG  APDGCNVPRP  SYWAFKMASH540
SLGRGSLLNS  GTESDYVTSY  LTYDNGKKSL  MLVNKYPQTR  ADVTINIPGF  EGRGTKQVLT600
AESGQPGPEK  GNFRVRQGTE  LALPPYSITT  ITLD634

Predicted 3D structure by AlphaFold2 with pLDDT = 91.18 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNENRVGDGN  PVILYVYDVK  FIEEIPGYVC  PEEFWGAFES  DAPDLQLHDF  ATEQDRNWET60
STGPKSSGSF  EFVEAAPEES  EGYSIKISYS  LHDWVDIIYN  YRDNNSPAEH  RDWTNHWGLK120
FDVYTERAFQ  PFNVQVNDSG  NELWIATAGA  EKGWTEVIVA  FRDFYKFPHW  QPPDAVHTGN180
FDIENVIALD  FKPSGEGTSA  QFKVHNVRLT  NDREARRAPV  PEYVAVNVTG  SFDEVVTEQI240
NEGIFGINAA  LWDGDLLLPE  TVEYVKAVNH  HVLRYPGGLR  ADDDNWKEVL  AAQDWMVDTD300
QFLEFCRATN  TEAMITVNFG  SGTVEDAADW  VRHHNVENDD  NVRYWEVGNE  LYGDWHPFQT360
TAEDYGKRTR  EFIIAMKEVD  PTIKVTFVGV  LDGEWNRIVL  EHVKDVADGI  NVHHYPQTTG420
EENDAGLLSS  PQTLDDIIPS  VRRQLAEWGE  PGREYEIWLT  EWNSVDFEPG  PQTLSIVNGL480
FVADYLGMLA  KHNIEQASYW  DIHNDITDQG  GDYGYLSRTG  APDGCNVPRP  SYWAFKMASH540
SLGRGSLLNS  GTESDYVTSY  LTYDNGKKSL  MLVNKYPQTR  ADVTINIPGF  EGRGTKQVLT600
AESGQPGPEK  GNFRVRQGTE  LALPPYSITT  ITLD634

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM11(47-211)+GH51(221-600)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help