CAZyme3D

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Entry ID

Information for CAZyme ID: CAE84958.1

Basic Information

GenBank IDCAE84958.1
FamilyCBM18, CBM50, GH18
Sequence Length963
UniProt IDQ707V5(100,100)Download
Average pLDDT?67.60
CAZy50 ID16012
CAZy50 RepYes, CAE84958.1
Structure ClusterSC_CBM18_clus1, SC_CBM18_clus4, SC_CBM50_clus27, SC_CBM50_clus42, SC_GH18_clus126
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID28986
KingdomEukaryota
PhylumAscomycota
ClassSaccharomycetes
OrderSaccharomycetales
FamilyDebaryomycetaceae
GenusMillerozyma
SpeciesMillerozyma acaciae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLIIVLLFLA  TLANSLDIRW  INSTKPHIIA  LSSKATCSYV  TIKSGQSAYD  ACGGKVSVSD60
LKKYNPNVDF  NKLEVGQYIC  CSSGSLPDFR  PDKNSDGSCK  TYTVKKGDTC  SAIISKYYPL120
SIDDLNKYNK  NTYNWGGCNN  LQLDQKICIS  DGTPPRPTPD  PKAECGPLAP  GDLYNSKCPL180
NACCSEFGFC  GLTSEFCDKK  SSNTGAPGTE  GCFSNCGYGS  LHGDSRGDFE  KIAYWMDSQG240
KLASNPLNVN  NKYTRVHYAF  VNINSDYSID  ESRISTSGFL  SITPKKIASF  GGWDFSTSPS300
TYKIFREGVK  SSNRDKFVNN  IVNFANKYSL  DGIDLDWEYP  GAPDIPGIPA  DDKNNGKNYL360
EFVKLLKSKL  GSKTLSMAIP  SSYWYLKNYP  IKDIQNYLDY  MVFMTYDIYG  TWDIDKDNHI420
KCHVNKSATI  ESLKMLDKAG  VQIGKTYGGI  ANYGRSYKAS  SSSCLKENCP  FSGPGNKREI480
TNTPGILADS  EIIAIDKSSA  KNDRWTNLES  DCIFMRYDGD  SIVSWGRDRN  SMSDFFHSHG540
LKGSVLWVDN  YFVHDDFDGN  VNYTNNDVPK  DDYWNNIMDE  EATILGEMTN  FDASLSSGSA600
CSKDPSSIDL  DTETDANCLY  LKMSYELLNN  GVDALDYIKN  IDKNSYNNDH  RKYVNVISDS660
LWGEFDDWLG  YNLFKTDKND  KDGEGDQYYN  CMHNGKPMPD  EEKGQCITDN  SCFNKACEVF720
GSNGRRISNF  VVKDGMKDEA  AKSFSDYSGL  TVKGSDFVKN  TKPKKVKQSG  GQTITYKNCD780
FVDFSKEFPN  PLDKIDNEYL  GHMQSIIDKV  KYSYTKNPIE  AYYSLTPLAA  LKDVSDTMKT840
VKKEAKKFRA  GRTVTKNIIN  YRFVLWYKYF  SNAIWFRVNL  AVDTALLIAT  TVAELKLEGK900
VSGDSLAFGL  IAIIQPFIKF  PKDSLVNIFK  NIDLSDVSKL  NGKFKSNSKF  EDIIKSKIKS960
KYC963

Predicted 3D structure by AlphaFold2 with pLDDT = 67.60 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLIIVLLFLA  TLANSLDIRW  INSTKPHIIA  LSSKATCSYV  TIKSGQSAYD  ACGGKVSVSD60
LKKYNPNVDF  NKLEVGQYIC  CSSGSLPDFR  PDKNSDGSCK  TYTVKKGDTC  SAIISKYYPL120
SIDDLNKYNK  NTYNWGGCNN  LQLDQKICIS  DGTPPRPTPD  PKAECGPLAP  GDLYNSKCPL180
NACCSEFGFC  GLTSEFCDKK  SSNTGAPGTE  GCFSNCGYGS  LHGDSRGDFE  KIAYWMDSQG240
KLASNPLNVN  NKYTRVHYAF  VNINSDYSID  ESRISTSGFL  SITPKKIASF  GGWDFSTSPS300
TYKIFREGVK  SSNRDKFVNN  IVNFANKYSL  DGIDLDWEYP  GAPDIPGIPA  DDKNNGKNYL360
EFVKLLKSKL  GSKTLSMAIP  SSYWYLKNYP  IKDIQNYLDY  MVFMTYDIYG  TWDIDKDNHI420
KCHVNKSATI  ESLKMLDKAG  VQIGKTYGGI  ANYGRSYKAS  SSSCLKENCP  FSGPGNKREI480
TNTPGILADS  EIIAIDKSSA  KNDRWTNLES  DCIFMRYDGD  SIVSWGRDRN  SMSDFFHSHG540
LKGSVLWVDN  YFVHDDFDGN  VNYTNNDVPK  DDYWNNIMDE  EATILGEMTN  FDASLSSGSA600
CSKDPSSIDL  DTETDANCLY  LKMSYELLNN  GVDALDYIKN  IDKNSYNNDH  RKYVNVISDS660
LWGEFDDWLG  YNLFKTDKND  KDGEGDQYYN  CMHNGKPMPD  EEKGQCITDN  SCFNKACEVF720
GSNGRRISNF  VVKDGMKDEA  AKSFSDYSGL  TVKGSDFVKN  TKPKKVKQSG  GQTITYKNCD780
FVDFSKEFPN  PLDKIDNEYL  GHMQSIIDKV  KYSYTKNPIE  AYYSLTPLAA  LKDVSDTMKT840
VKKEAKKFRA  GRTVTKNIIN  YRFVLWYKYF  SNAIWFRVNL  AVDTALLIAT  TVAELKLEGK900
VSGDSLAFGL  IAIIQPFIKF  PKDSLVNIFK  NIDLSDVSKL  NGKFKSNSKF  EDIIKSKIKS960
KYC963

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM50(102-150)+CBM18(165-216)+GH18(232-547)

MLIIVLLFLA  TLANSLDIRW  INSTKPHIIA  LSSKATCSYV  TIKSGQSAYD  ACGGKVSVSD60
LKKYNPNVDF  NKLEVGQYIC  CSSGSLPDFR  PDKNSDGSCK  TYTVKKGDTC  SAIISKYYPL120
SIDDLNKYNK  NTYNWGGCNN  LQLDQKICIS  DGTPPRPTPD  PKAECGPLAP  GDLYNSKCPL180
NACCSEFGFC  GLTSEFCDKK  SSNTGAPGTE  GCFSNCGYGS  LHGDSRGDFE  KIAYWMDSQG240
KLASNPLNVN  NKYTRVHYAF  VNINSDYSID  ESRISTSGFL  SITPKKIASF  GGWDFSTSPS300
TYKIFREGVK  SSNRDKFVNN  IVNFANKYSL  DGIDLDWEYP  GAPDIPGIPA  DDKNNGKNYL360
EFVKLLKSKL  GSKTLSMAIP  SSYWYLKNYP  IKDIQNYLDY  MVFMTYDIYG  TWDIDKDNHI420
KCHVNKSATI  ESLKMLDKAG  VQIGKTYGGI  ANYGRSYKAS  SSSCLKENCP  FSGPGNKREI480
TNTPGILADS  EIIAIDKSSA  KNDRWTNLES  DCIFMRYDGD  SIVSWGRDRN  SMSDFFHSHG540
LKGSVLWVDN  YFVHDDFDGN  VNYTNNDVPK  DDYWNNIMDE  EATILGEMTN  FDASLSSGSA600
CSKDPSSIDL  DTETDANCLY  LKMSYELLNN  GVDALDYIKN  IDKNSYNNDH  RKYVNVISDS660
LWGEFDDWLG  YNLFKTDKND  KDGEGDQYYN  CMHNGKPMPD  EEKGQCITDN  SCFNKACEVF720
GSNGRRISNF  VVKDGMKDEA  AKSFSDYSGL  TVKGSDFVKN  TKPKKVKQSG  GQTITYKNCD780
FVDFSKEFPN  PLDKIDNEYL  GHMQSIIDKV  KYSYTKNPIE  AYYSLTPLAA  LKDVSDTMKT840
VKKEAKKFRA  GRTVTKNIIN  YRFVLWYKYF  SNAIWFRVNL  AVDTALLIAT  TVAELKLEGK900
VSGDSLAFGL  IAIIQPFIKF  PKDSLVNIFK  NIDLSDVSKL  NGKFKSNSKF  EDIIKSKIKS960
KYC963

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help