Basic information |
Taxonomy |
Protein Sequence |
Structure visualization |
Binding Residues |
dbCAN domains |
Homology within Cluster
Information for CAZyme ID: CAE6089385.1
Basic Information
| GenBank ID | CAE6089385.1 |
| Family | AA1 |
| Sequence Length | 1726 |
| UniProt ID | A0A8S2ARR6(100,100) |
| Average pLDDT? | 74.76 |
| CAZy50 ID | 2503 |
| CAZy50 Rep | Yes, CAE6089385.1 |
| Structure Cluster | SC_AA1_clus31 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 38785 |
| Kingdom | Eukaryota |
| Phylum | Streptophyta |
| Class | Magnoliopsida |
| Order | Brassicales |
| Family | Brassicaceae |
| Genus | Arabidopsis |
| Species | Arabidopsis arenosa |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MEQLRSFFVF LAVLLASLVN AEVHFHEFVI QETPVKRLCR VHNSITVNGQ FPGPTLEVRN | 60 |
| GDSLVITAIN KARYNITLHW HGIRQMRNPW ADGPEYITQC PIQPGGSYTY KFTIEDQEGT | 120 |
| LWWHAHSRWL RATVYGALII RPPLSSPHYP FPVIPKREIT LLLGEWWDRN PMDVLNLAQF | 180 |
| TGAAPNISDA FTINGQPGDL YRCSSQETLR FLVGSGEIVL LRVINSALNQ ELFFGVANHK | 240 |
| LTVVAADASY TKPFSTNVIM LGPGQTTDVL LTADQPPAHY YMAAHAYNSA NAAFDNTTTT | 300 |
| AILKYKDASC VTLQGKSQAQ AIPAQLPGFN DTATAAAFTA QMKSPSKVKV PLEIDENLFF | 360 |
| TVGLGLFNCT TPNTQRCQGP NGTRFTASIN NVSFVFPKQN SIMQAYYQGT PAGVFTTDFP | 420 |
| PTPPVTFDYT GNVSRGLWQP TRGTKAYKLK FNSNVQIILQ DTSIVTTENH PMHLHGYEFY | 480 |
| VVGTGVGNFN PNTDTASFNL IDPPRRNTIG TPPGGWVAIR FVANNPGAWL MHCHIDSHIF | 540 |
| WGLAMVFLVE NGEGHLQSVQ SPPLDLPQSS PKVFLNFAQK RKKTMHQPGI EPGSVPWQGT | 600 |
| ILPLDHWCLR DPNFVTFAAM ASALECWTTR NAAGGCADDD FVDQVLMCSD DRSESLTAAP | 660 |
| PSDQTSSAMQ KRFQRLGRNV SDAIASLKNS LNLDSGRENQ NAATGGGRKL VWATVVRNLA | 720 |
| KMYPGSQLPD KLVSNLRKHY DSLPLSYSQT GFDMKDVFVH IKLIEQTSGD DNPVFVIQEV | 780 |
| CDEEADDQGS LFKLTFACTT SLPWSTISGS LDCASICCKK VQIFEKKGLT LGVVLLLVES | 840 |
| GQEKLFKIKV ENALKSAVRK PKSTSVKLPF GLCGCQEQNA GVGEFGDVDV ESIDQCYRHE | 900 |
| LDNQNTRIQL QMPPPSSSFS VSVDEWQTIQ SGEDDIGKWL LNSDDIEFGG QLGPNSFKGV | 960 |
| YRGIKVAIEK LKGCEKGNSY EFEIRKDFLE LMTCGHKSIL QFYGVCIDEN HGLCVVTKLM | 1020 |
| QGGSLRELVL KKKKLQTKVI FQIAVDIAEG MKFINDHGVA YRDLNTQRIL LDKQGNACLG | 1080 |
| DLGIVNACKS VNEAMEYETD GYRWLAPEII AGDPEKTRES WMSNAYSFGM VLWEMVTGEE | 1140 |
| AYGSCSPVQA AVGIAACGLR PDIPKECPQV LRYLMTKCWN TCPSTRLNFS QIHCILLRAI | 1200 |
| SRTDALALMK FKERIERDPF GALMNWGELS HCSWSGVVCS NDGRVVILNL RDLSLQGTLA | 1260 |
| PELGNLTHLK SLILRNNSFS GKVPEEVTEL QELEILDLCD NNFGQPFPFS SNGRRLLQVT | 1320 |
| SPGKAPPPTQ DLIVKPFLSP FPPSIGGQSP PPSSPVIPPN PPQPPPVPPP PAQPPPAQSP | 1380 |
| PPQLSDVPNA ANKKRSQKTK TYIIVGVLVG VFAVIAVLVA FFFLWNQKVK MIKPWGATGS | 1440 |
| SGELQNVVTT GVPKLKLAEL ETACEDFSNI IGSTSSDATI YKGTLSTGSE IAVLAVASGS | 1500 |
| LQDWSVDHET QFQEKIQRLS QVNHKNFLNV IGYCHEDEPF NRMLVFEYAP NGSLFEHLHD | 1560 |
| QDAEHLDWPM RLRITMGIAY CMEHMHNLNP KPISHTNLNS SSVYLATDYA AKVSDFTFLS | 1620 |
| STPLDPMTNV SSFGTLLQEI ITGKIPDPDS LFHDETKPVA DPSLKSFQED VMERLWEVVK | 1680 |
| ECLNQKLEMK EVVVKLREIT GITPEAALPS RSPAWWAELE IISTEM | 1726 |
Predicted 3D structure by AlphaFold2 with pLDDT = 74.76 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MEQLRSFFVF LAVLLASLVN AEVHFHEFVI QETPVKRLCR VHNSITVNGQ FPGPTLEVRN | 60 |
| GDSLVITAIN KARYNITLHW HGIRQMRNPW ADGPEYITQC PIQPGGSYTY KFTIEDQEGT | 120 |
| LWWHAHSRWL RATVYGALII RPPLSSPHYP FPVIPKREIT LLLGEWWDRN PMDVLNLAQF | 180 |
| TGAAPNISDA FTINGQPGDL YRCSSQETLR FLVGSGEIVL LRVINSALNQ ELFFGVANHK | 240 |
| LTVVAADASY TKPFSTNVIM LGPGQTTDVL LTADQPPAHY YMAAHAYNSA NAAFDNTTTT | 300 |
| AILKYKDASC VTLQGKSQAQ AIPAQLPGFN DTATAAAFTA QMKSPSKVKV PLEIDENLFF | 360 |
| TVGLGLFNCT TPNTQRCQGP NGTRFTASIN NVSFVFPKQN SIMQAYYQGT PAGVFTTDFP | 420 |
| PTPPVTFDYT GNVSRGLWQP TRGTKAYKLK FNSNVQIILQ DTSIVTTENH PMHLHGYEFY | 480 |
| VVGTGVGNFN PNTDTASFNL IDPPRRNTIG TPPGGWVAIR FVANNPGAWL MHCHIDSHIF | 540 |
| WGLAMVFLVE NGEGHLQSVQ SPPLDLPQSS PKVFLNFAQK RKKTMHQPGI EPGSVPWQGT | 600 |
| ILPLDHWCLR DPNFVTFAAM ASALECWTTR NAAGGCADDD FVDQVLMCSD DRSESLTAAP | 660 |
| PSDQTSSAMQ KRFQRLGRNV SDAIASLKNS LNLDSGRENQ NAATGGGRKL VWATVVRNLA | 720 |
| KMYPGSQLPD KLVSNLRKHY DSLPLSYSQT GFDMKDVFVH IKLIEQTSGD DNPVFVIQEV | 780 |
| CDEEADDQGS LFKLTFACTT SLPWSTISGS LDCASICCKK VQIFEKKGLT LGVVLLLVES | 840 |
| GQEKLFKIKV ENALKSAVRK PKSTSVKLPF GLCGCQEQNA GVGEFGDVDV ESIDQCYRHE | 900 |
| LDNQNTRIQL QMPPPSSSFS VSVDEWQTIQ SGEDDIGKWL LNSDDIEFGG QLGPNSFKGV | 960 |
| YRGIKVAIEK LKGCEKGNSY EFEIRKDFLE LMTCGHKSIL QFYGVCIDEN HGLCVVTKLM | 1020 |
| QGGSLRELVL KKKKLQTKVI FQIAVDIAEG MKFINDHGVA YRDLNTQRIL LDKQGNACLG | 1080 |
| DLGIVNACKS VNEAMEYETD GYRWLAPEII AGDPEKTRES WMSNAYSFGM VLWEMVTGEE | 1140 |
| AYGSCSPVQA AVGIAACGLR PDIPKECPQV LRYLMTKCWN TCPSTRLNFS QIHCILLRAI | 1200 |
| SRTDALALMK FKERIERDPF GALMNWGELS HCSWSGVVCS NDGRVVILNL RDLSLQGTLA | 1260 |
| PELGNLTHLK SLILRNNSFS GKVPEEVTEL QELEILDLCD NNFGQPFPFS SNGRRLLQVT | 1320 |
| SPGKAPPPTQ DLIVKPFLSP FPPSIGGQSP PPSSPVIPPN PPQPPPVPPP PAQPPPAQSP | 1380 |
| PPQLSDVPNA ANKKRSQKTK TYIIVGVLVG VFAVIAVLVA FFFLWNQKVK MIKPWGATGS | 1440 |
| SGELQNVVTT GVPKLKLAEL ETACEDFSNI IGSTSSDATI YKGTLSTGSE IAVLAVASGS | 1500 |
| LQDWSVDHET QFQEKIQRLS QVNHKNFLNV IGYCHEDEPF NRMLVFEYAP NGSLFEHLHD | 1560 |
| QDAEHLDWPM RLRITMGIAY CMEHMHNLNP KPISHTNLNS SSVYLATDYA AKVSDFTFLS | 1620 |
| STPLDPMTNV SSFGTLLQEI ITGKIPDPDS LFHDETKPVA DPSLKSFQED VMERLWEVVK | 1680 |
| ECLNQKLEMK EVVVKLREIT GITPEAALPS RSPAWWAELE IISTEM | 1726 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.