CAZyme3D

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Entry ID

Information for CAZyme ID: CAE6089385.1

Basic Information

GenBank IDCAE6089385.1
FamilyAA1
Sequence Length1726
UniProt IDA0A8S2ARR6(100,100)Download
Average pLDDT?74.76
CAZy50 ID2503
CAZy50 RepYes, CAE6089385.1
Structure ClusterSC_AA1_clus31
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID38785
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis arenosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEQLRSFFVF  LAVLLASLVN  AEVHFHEFVI  QETPVKRLCR  VHNSITVNGQ  FPGPTLEVRN60
GDSLVITAIN  KARYNITLHW  HGIRQMRNPW  ADGPEYITQC  PIQPGGSYTY  KFTIEDQEGT120
LWWHAHSRWL  RATVYGALII  RPPLSSPHYP  FPVIPKREIT  LLLGEWWDRN  PMDVLNLAQF180
TGAAPNISDA  FTINGQPGDL  YRCSSQETLR  FLVGSGEIVL  LRVINSALNQ  ELFFGVANHK240
LTVVAADASY  TKPFSTNVIM  LGPGQTTDVL  LTADQPPAHY  YMAAHAYNSA  NAAFDNTTTT300
AILKYKDASC  VTLQGKSQAQ  AIPAQLPGFN  DTATAAAFTA  QMKSPSKVKV  PLEIDENLFF360
TVGLGLFNCT  TPNTQRCQGP  NGTRFTASIN  NVSFVFPKQN  SIMQAYYQGT  PAGVFTTDFP420
PTPPVTFDYT  GNVSRGLWQP  TRGTKAYKLK  FNSNVQIILQ  DTSIVTTENH  PMHLHGYEFY480
VVGTGVGNFN  PNTDTASFNL  IDPPRRNTIG  TPPGGWVAIR  FVANNPGAWL  MHCHIDSHIF540
WGLAMVFLVE  NGEGHLQSVQ  SPPLDLPQSS  PKVFLNFAQK  RKKTMHQPGI  EPGSVPWQGT600
ILPLDHWCLR  DPNFVTFAAM  ASALECWTTR  NAAGGCADDD  FVDQVLMCSD  DRSESLTAAP660
PSDQTSSAMQ  KRFQRLGRNV  SDAIASLKNS  LNLDSGRENQ  NAATGGGRKL  VWATVVRNLA720
KMYPGSQLPD  KLVSNLRKHY  DSLPLSYSQT  GFDMKDVFVH  IKLIEQTSGD  DNPVFVIQEV780
CDEEADDQGS  LFKLTFACTT  SLPWSTISGS  LDCASICCKK  VQIFEKKGLT  LGVVLLLVES840
GQEKLFKIKV  ENALKSAVRK  PKSTSVKLPF  GLCGCQEQNA  GVGEFGDVDV  ESIDQCYRHE900
LDNQNTRIQL  QMPPPSSSFS  VSVDEWQTIQ  SGEDDIGKWL  LNSDDIEFGG  QLGPNSFKGV960
YRGIKVAIEK  LKGCEKGNSY  EFEIRKDFLE  LMTCGHKSIL  QFYGVCIDEN  HGLCVVTKLM1020
QGGSLRELVL  KKKKLQTKVI  FQIAVDIAEG  MKFINDHGVA  YRDLNTQRIL  LDKQGNACLG1080
DLGIVNACKS  VNEAMEYETD  GYRWLAPEII  AGDPEKTRES  WMSNAYSFGM  VLWEMVTGEE1140
AYGSCSPVQA  AVGIAACGLR  PDIPKECPQV  LRYLMTKCWN  TCPSTRLNFS  QIHCILLRAI1200
SRTDALALMK  FKERIERDPF  GALMNWGELS  HCSWSGVVCS  NDGRVVILNL  RDLSLQGTLA1260
PELGNLTHLK  SLILRNNSFS  GKVPEEVTEL  QELEILDLCD  NNFGQPFPFS  SNGRRLLQVT1320
SPGKAPPPTQ  DLIVKPFLSP  FPPSIGGQSP  PPSSPVIPPN  PPQPPPVPPP  PAQPPPAQSP1380
PPQLSDVPNA  ANKKRSQKTK  TYIIVGVLVG  VFAVIAVLVA  FFFLWNQKVK  MIKPWGATGS1440
SGELQNVVTT  GVPKLKLAEL  ETACEDFSNI  IGSTSSDATI  YKGTLSTGSE  IAVLAVASGS1500
LQDWSVDHET  QFQEKIQRLS  QVNHKNFLNV  IGYCHEDEPF  NRMLVFEYAP  NGSLFEHLHD1560
QDAEHLDWPM  RLRITMGIAY  CMEHMHNLNP  KPISHTNLNS  SSVYLATDYA  AKVSDFTFLS1620
STPLDPMTNV  SSFGTLLQEI  ITGKIPDPDS  LFHDETKPVA  DPSLKSFQED  VMERLWEVVK1680
ECLNQKLEMK  EVVVKLREIT  GITPEAALPS  RSPAWWAELE  IISTEM1726

Predicted 3D structure by AlphaFold2 with pLDDT = 74.76 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEQLRSFFVF  LAVLLASLVN  AEVHFHEFVI  QETPVKRLCR  VHNSITVNGQ  FPGPTLEVRN60
GDSLVITAIN  KARYNITLHW  HGIRQMRNPW  ADGPEYITQC  PIQPGGSYTY  KFTIEDQEGT120
LWWHAHSRWL  RATVYGALII  RPPLSSPHYP  FPVIPKREIT  LLLGEWWDRN  PMDVLNLAQF180
TGAAPNISDA  FTINGQPGDL  YRCSSQETLR  FLVGSGEIVL  LRVINSALNQ  ELFFGVANHK240
LTVVAADASY  TKPFSTNVIM  LGPGQTTDVL  LTADQPPAHY  YMAAHAYNSA  NAAFDNTTTT300
AILKYKDASC  VTLQGKSQAQ  AIPAQLPGFN  DTATAAAFTA  QMKSPSKVKV  PLEIDENLFF360
TVGLGLFNCT  TPNTQRCQGP  NGTRFTASIN  NVSFVFPKQN  SIMQAYYQGT  PAGVFTTDFP420
PTPPVTFDYT  GNVSRGLWQP  TRGTKAYKLK  FNSNVQIILQ  DTSIVTTENH  PMHLHGYEFY480
VVGTGVGNFN  PNTDTASFNL  IDPPRRNTIG  TPPGGWVAIR  FVANNPGAWL  MHCHIDSHIF540
WGLAMVFLVE  NGEGHLQSVQ  SPPLDLPQSS  PKVFLNFAQK  RKKTMHQPGI  EPGSVPWQGT600
ILPLDHWCLR  DPNFVTFAAM  ASALECWTTR  NAAGGCADDD  FVDQVLMCSD  DRSESLTAAP660
PSDQTSSAMQ  KRFQRLGRNV  SDAIASLKNS  LNLDSGRENQ  NAATGGGRKL  VWATVVRNLA720
KMYPGSQLPD  KLVSNLRKHY  DSLPLSYSQT  GFDMKDVFVH  IKLIEQTSGD  DNPVFVIQEV780
CDEEADDQGS  LFKLTFACTT  SLPWSTISGS  LDCASICCKK  VQIFEKKGLT  LGVVLLLVES840
GQEKLFKIKV  ENALKSAVRK  PKSTSVKLPF  GLCGCQEQNA  GVGEFGDVDV  ESIDQCYRHE900
LDNQNTRIQL  QMPPPSSSFS  VSVDEWQTIQ  SGEDDIGKWL  LNSDDIEFGG  QLGPNSFKGV960
YRGIKVAIEK  LKGCEKGNSY  EFEIRKDFLE  LMTCGHKSIL  QFYGVCIDEN  HGLCVVTKLM1020
QGGSLRELVL  KKKKLQTKVI  FQIAVDIAEG  MKFINDHGVA  YRDLNTQRIL  LDKQGNACLG1080
DLGIVNACKS  VNEAMEYETD  GYRWLAPEII  AGDPEKTRES  WMSNAYSFGM  VLWEMVTGEE1140
AYGSCSPVQA  AVGIAACGLR  PDIPKECPQV  LRYLMTKCWN  TCPSTRLNFS  QIHCILLRAI1200
SRTDALALMK  FKERIERDPF  GALMNWGELS  HCSWSGVVCS  NDGRVVILNL  RDLSLQGTLA1260
PELGNLTHLK  SLILRNNSFS  GKVPEEVTEL  QELEILDLCD  NNFGQPFPFS  SNGRRLLQVT1320
SPGKAPPPTQ  DLIVKPFLSP  FPPSIGGQSP  PPSSPVIPPN  PPQPPPVPPP  PAQPPPAQSP1380
PPQLSDVPNA  ANKKRSQKTK  TYIIVGVLVG  VFAVIAVLVA  FFFLWNQKVK  MIKPWGATGS1440
SGELQNVVTT  GVPKLKLAEL  ETACEDFSNI  IGSTSSDATI  YKGTLSTGSE  IAVLAVASGS1500
LQDWSVDHET  QFQEKIQRLS  QVNHKNFLNV  IGYCHEDEPF  NRMLVFEYAP  NGSLFEHLHD1560
QDAEHLDWPM  RLRITMGIAY  CMEHMHNLNP  KPISHTNLNS  SSVYLATDYA  AKVSDFTFLS1620
STPLDPMTNV  SSFGTLLQEI  ITGKIPDPDS  LFHDETKPVA  DPSLKSFQED  VMERLWEVVK1680
ECLNQKLEMK  EVVVKLREIT  GITPEAALPS  RSPAWWAELE  IISTEM1726

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA1(36-544)

MEQLRSFFVF  LAVLLASLVN  AEVHFHEFVI  QETPVKRLCR  VHNSITVNGQ  FPGPTLEVRN60
GDSLVITAIN  KARYNITLHW  HGIRQMRNPW  ADGPEYITQC  PIQPGGSYTY  KFTIEDQEGT120
LWWHAHSRWL  RATVYGALII  RPPLSSPHYP  FPVIPKREIT  LLLGEWWDRN  PMDVLNLAQF180
TGAAPNISDA  FTINGQPGDL  YRCSSQETLR  FLVGSGEIVL  LRVINSALNQ  ELFFGVANHK240
LTVVAADASY  TKPFSTNVIM  LGPGQTTDVL  LTADQPPAHY  YMAAHAYNSA  NAAFDNTTTT300
AILKYKDASC  VTLQGKSQAQ  AIPAQLPGFN  DTATAAAFTA  QMKSPSKVKV  PLEIDENLFF360
TVGLGLFNCT  TPNTQRCQGP  NGTRFTASIN  NVSFVFPKQN  SIMQAYYQGT  PAGVFTTDFP420
PTPPVTFDYT  GNVSRGLWQP  TRGTKAYKLK  FNSNVQIILQ  DTSIVTTENH  PMHLHGYEFY480
VVGTGVGNFN  PNTDTASFNL  IDPPRRNTIG  TPPGGWVAIR  FVANNPGAWL  MHCHIDSHIF540
WGLAMVFLVE  NGEGHLQSVQ  SPPLDLPQSS  PKVFLNFAQK  RKKTMHQPGI  EPGSVPWQGT600
ILPLDHWCLR  DPNFVTFAAM  ASALECWTTR  NAAGGCADDD  FVDQVLMCSD  DRSESLTAAP660
PSDQTSSAMQ  KRFQRLGRNV  SDAIASLKNS  LNLDSGRENQ  NAATGGGRKL  VWATVVRNLA720
KMYPGSQLPD  KLVSNLRKHY  DSLPLSYSQT  GFDMKDVFVH  IKLIEQTSGD  DNPVFVIQEV780
CDEEADDQGS  LFKLTFACTT  SLPWSTISGS  LDCASICCKK  VQIFEKKGLT  LGVVLLLVES840
GQEKLFKIKV  ENALKSAVRK  PKSTSVKLPF  GLCGCQEQNA  GVGEFGDVDV  ESIDQCYRHE900
LDNQNTRIQL  QMPPPSSSFS  VSVDEWQTIQ  SGEDDIGKWL  LNSDDIEFGG  QLGPNSFKGV960
YRGIKVAIEK  LKGCEKGNSY  EFEIRKDFLE  LMTCGHKSIL  QFYGVCIDEN  HGLCVVTKLM1020
QGGSLRELVL  KKKKLQTKVI  FQIAVDIAEG  MKFINDHGVA  YRDLNTQRIL  LDKQGNACLG1080
DLGIVNACKS  VNEAMEYETD  GYRWLAPEII  AGDPEKTRES  WMSNAYSFGM  VLWEMVTGEE1140
AYGSCSPVQA  AVGIAACGLR  PDIPKECPQV  LRYLMTKCWN  TCPSTRLNFS  QIHCILLRAI1200
SRTDALALMK  FKERIERDPF  GALMNWGELS  HCSWSGVVCS  NDGRVVILNL  RDLSLQGTLA1260
PELGNLTHLK  SLILRNNSFS  GKVPEEVTEL  QELEILDLCD  NNFGQPFPFS  SNGRRLLQVT1320
SPGKAPPPTQ  DLIVKPFLSP  FPPSIGGQSP  PPSSPVIPPN  PPQPPPVPPP  PAQPPPAQSP1380
PPQLSDVPNA  ANKKRSQKTK  TYIIVGVLVG  VFAVIAVLVA  FFFLWNQKVK  MIKPWGATGS1440
SGELQNVVTT  GVPKLKLAEL  ETACEDFSNI  IGSTSSDATI  YKGTLSTGSE  IAVLAVASGS1500
LQDWSVDHET  QFQEKIQRLS  QVNHKNFLNV  IGYCHEDEPF  NRMLVFEYAP  NGSLFEHLHD1560
QDAEHLDWPM  RLRITMGIAY  CMEHMHNLNP  KPISHTNLNS  SSVYLATDYA  AKVSDFTFLS1620
STPLDPMTNV  SSFGTLLQEI  ITGKIPDPDS  LFHDETKPVA  DPSLKSFQED  VMERLWEVVK1680
ECLNQKLEMK  EVVVKLREIT  GITPEAALPS  RSPAWWAELE  IISTEM1726

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help