CAZyme3D

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Entry ID

Information for CAZyme ID: CAE6062859.1

Basic Information

GenBank IDCAE6062859.1
FamilyGH16_20
Sequence Length799
UniProt IDA0A8S2AAI5(100,100)Download
Average pLDDT?76.73
CAZy50 ID27438
CAZy50 RepYes, CAE6062859.1
Structure ClusterSC_GH16_clus331
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID38785
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis arenosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

METLSRLLVF  MSLFSGLVSG  FALQNLPITS  FEEGYTQLFG  DKNLFVHKDG  KSVRLTLDER60
TGSGFVSNDL  YLHGFFSASI  KLPSDYSAGV  VVAFYMSNGD  MYEKNHDEID  FEFLGNIRGK120
EWRIQTNIYG  NGSTHLGREE  RYNLWFDPTE  DFHQYSILWS  DSYIIFFVDN  VPIREVKRTA180
AMGGDFPSKP  MSLYTTIWDG  SKWATDGGKY  GVNYKYAPYI  ARFSDLVLHG  CPVDPIEQFP240
RCDEGAAEDI  RAAQEITPSQ  RSKMDVFRRK  HMTYSYCYDR  TRYKVALSEC  VVNPAEAQRL300
RVYDPVTFGG  IPRRHRNGKH  RSKRSRVDGT  ESLGNIGVTR  VNASQRNHSK  KLTKNLRNPR360
RTKLPPDFGV  NLYLRKPKIE  PVVDDYNDDD  DGDVQDQESV  DDDAVVWEPE  EIEAISSLFQ420
KRIPQKPGKP  IRVRPLPLPQ  PHKLRPLGLP  TPKKNIRSAA  LSSVSKQVYK  DPSFLIGLAR480
EIKSLPSSDA  DVSLVLNKWV  SFLRKGSLSM  TIRELGHMGL  PERALQTYHW  AEKHSHLVPD540
NRILASTIQV  LAKHHELKLL  KFDNSLASKN  VIEAMIKGCI  EGGWLNLARK  LILISKSNNR600
ILDSSIYVKM  ILEIAKNPDK  YHLVVTLLEE  LKEREDLKLS  QQDCTGIMKI  CVKLGEFELV660
ESLFDWFKES  NREPSVVMYT  TMIHSRYSEQ  KYREAMNVVW  EMEESNCLLD  LPAYRVVIKL720
FVALDDLGRA  MRYYSKLKEA  GFSPTYDIYR  DMINVYTASG  RLTKCKEICK  EVEDAGLRLD780
KDTLFMLLQL  EKQTMSLLH799

Predicted 3D structure by AlphaFold2 with pLDDT = 76.73 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

METLSRLLVF  MSLFSGLVSG  FALQNLPITS  FEEGYTQLFG  DKNLFVHKDG  KSVRLTLDER60
TGSGFVSNDL  YLHGFFSASI  KLPSDYSAGV  VVAFYMSNGD  MYEKNHDEID  FEFLGNIRGK120
EWRIQTNIYG  NGSTHLGREE  RYNLWFDPTE  DFHQYSILWS  DSYIIFFVDN  VPIREVKRTA180
AMGGDFPSKP  MSLYTTIWDG  SKWATDGGKY  GVNYKYAPYI  ARFSDLVLHG  CPVDPIEQFP240
RCDEGAAEDI  RAAQEITPSQ  RSKMDVFRRK  HMTYSYCYDR  TRYKVALSEC  VVNPAEAQRL300
RVYDPVTFGG  IPRRHRNGKH  RSKRSRVDGT  ESLGNIGVTR  VNASQRNHSK  KLTKNLRNPR360
RTKLPPDFGV  NLYLRKPKIE  PVVDDYNDDD  DGDVQDQESV  DDDAVVWEPE  EIEAISSLFQ420
KRIPQKPGKP  IRVRPLPLPQ  PHKLRPLGLP  TPKKNIRSAA  LSSVSKQVYK  DPSFLIGLAR480
EIKSLPSSDA  DVSLVLNKWV  SFLRKGSLSM  TIRELGHMGL  PERALQTYHW  AEKHSHLVPD540
NRILASTIQV  LAKHHELKLL  KFDNSLASKN  VIEAMIKGCI  EGGWLNLARK  LILISKSNNR600
ILDSSIYVKM  ILEIAKNPDK  YHLVVTLLEE  LKEREDLKLS  QQDCTGIMKI  CVKLGEFELV660
ESLFDWFKES  NREPSVVMYT  TMIHSRYSEQ  KYREAMNVVW  EMEESNCLLD  LPAYRVVIKL720
FVALDDLGRA  MRYYSKLKEA  GFSPTYDIYR  DMINVYTASG  RLTKCKEICK  EVEDAGLRLD780
KDTLFMLLQL  EKQTMSLLH799

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH16_20(50-214)

METLSRLLVF  MSLFSGLVSG  FALQNLPITS  FEEGYTQLFG  DKNLFVHKDG  KSVRLTLDER60
TGSGFVSNDL  YLHGFFSASI  KLPSDYSAGV  VVAFYMSNGD  MYEKNHDEID  FEFLGNIRGK120
EWRIQTNIYG  NGSTHLGREE  RYNLWFDPTE  DFHQYSILWS  DSYIIFFVDN  VPIREVKRTA180
AMGGDFPSKP  MSLYTTIWDG  SKWATDGGKY  GVNYKYAPYI  ARFSDLVLHG  CPVDPIEQFP240
RCDEGAAEDI  RAAQEITPSQ  RSKMDVFRRK  HMTYSYCYDR  TRYKVALSEC  VVNPAEAQRL300
RVYDPVTFGG  IPRRHRNGKH  RSKRSRVDGT  ESLGNIGVTR  VNASQRNHSK  KLTKNLRNPR360
RTKLPPDFGV  NLYLRKPKIE  PVVDDYNDDD  DGDVQDQESV  DDDAVVWEPE  EIEAISSLFQ420
KRIPQKPGKP  IRVRPLPLPQ  PHKLRPLGLP  TPKKNIRSAA  LSSVSKQVYK  DPSFLIGLAR480
EIKSLPSSDA  DVSLVLNKWV  SFLRKGSLSM  TIRELGHMGL  PERALQTYHW  AEKHSHLVPD540
NRILASTIQV  LAKHHELKLL  KFDNSLASKN  VIEAMIKGCI  EGGWLNLARK  LILISKSNNR600
ILDSSIYVKM  ILEIAKNPDK  YHLVVTLLEE  LKEREDLKLS  QQDCTGIMKI  CVKLGEFELV660
ESLFDWFKES  NREPSVVMYT  TMIHSRYSEQ  KYREAMNVVW  EMEESNCLLD  LPAYRVVIKL720
FVALDDLGRA  MRYYSKLKEA  GFSPTYDIYR  DMINVYTASG  RLTKCKEICK  EVEDAGLRLD780
KDTLFMLLQL  EKQTMSLLH799

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help