CAZyme3D

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Entry ID

Information for CAZyme ID: CAE5957436.1

Basic Information

GenBank IDCAE5957436.1
FamilyGT37
Sequence Length1006
UniProt IDA0A8S1ZD61(100,100)Download
Average pLDDT?83.86
CAZy50 ID14044
CAZy50 RepYes, CAE5957436.1
Structure ClusterSC_GT37_clus10
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID38785
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis arenosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKLMITIVTC  LLLWSLMLLS  FFIIFNHQLL  NATTNGSTDS  GKPRDKLLGR  LLTDEFDENS60
CLSRYQSSLY  RKPSPYKPSR  YLVSKLRSYE  MLHKRCGPGT  KAYKKATESL  GENYSSKSVG120
ECRYIVWIAV  YGLGNRVLTL  AALFLYALLT  DRIMLVDQRK  DINDLLCEPF  PGTSWLLPLD180
FPLTDQLDSF  DRESPRCYGT  MLKNNAINST  TIIHSYLCLY  LIHDYDDYDK  MFFCEKDQLL240
IRQVPWLVFN  SNLYFIPSLW  LIPSFQSELS  KLFPQKETVF  HHLGRYLFHP  TNQVWGMITR300
AYNAYLSRAD  ERLGIQVRVF  SKPAGYFQHV  MEQILACTQR  EKLLPEVSVS  ESQVTNNTSR360
SLKLKAVLVT  SLYPEYSENL  RQMYWEGSSS  TGEIVQVYQP  SQEMHQQTDN  KLHDQKALAE420
IYLLSLTDHI  VTSDSSTFGY  VAQGLGGLKP  WILYKPKNNT  APERLSHHVF  VPCQWSHVSL480
ELHSMVVKLR  KISIMMKLTI  AIATCLVLCL  VLLLPSSNIS  NRHKSDLTTN  GLNNSERQSE540
KLLGGLLASG  FDEKSCLSRY  DQSMRKPSLY  KPSGYLVSKL  RSYEMLHKRC  GPGTKPYKRA600
TKQLGHNELR  SSGDECRYVV  WMPMFGLGNR  MLSLVSVFLY  ALLTDRVMLV  DQRNDITDLF660
CEPFPETSWL  LPLDFPLTDQ  LDGFNREHSR  CYGTMLKNHA  INSTTIPSHL  YLDIFHDSRD720
QDKRFFCEED  QAFLGKVPWL  VVKSNLYFVP  SLWMIPSFQT  KLIKLFPQKE  TVFHHLARYL780
FHPTNQVWGM  VTRSYNAYLS  RADARVGIQV  RVFSKPAGYF  QHVMDQILSC  TQREKLLPEL840
ATPETQVTNT  SRSLKLKAVL  VTSLHPEYSD  HLKNMFLEQP  SSTGEIIEVY  QPSGEKIQQT900
DKKLHDQKAL  AEIYLLSLTD  ELVTSTRSTF  GYVAQGLGGL  KPWILYEPWE  KKTPNPPCVK960
AMSMEPCFLR  APLHGCQAKT  IKITPFVRFC  EDWKTGLKLV  DVSDEL1006

Predicted 3D structure by AlphaFold2 with pLDDT = 83.86 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKLMITIVTC  LLLWSLMLLS  FFIIFNHQLL  NATTNGSTDS  GKPRDKLLGR  LLTDEFDENS60
CLSRYQSSLY  RKPSPYKPSR  YLVSKLRSYE  MLHKRCGPGT  KAYKKATESL  GENYSSKSVG120
ECRYIVWIAV  YGLGNRVLTL  AALFLYALLT  DRIMLVDQRK  DINDLLCEPF  PGTSWLLPLD180
FPLTDQLDSF  DRESPRCYGT  MLKNNAINST  TIIHSYLCLY  LIHDYDDYDK  MFFCEKDQLL240
IRQVPWLVFN  SNLYFIPSLW  LIPSFQSELS  KLFPQKETVF  HHLGRYLFHP  TNQVWGMITR300
AYNAYLSRAD  ERLGIQVRVF  SKPAGYFQHV  MEQILACTQR  EKLLPEVSVS  ESQVTNNTSR360
SLKLKAVLVT  SLYPEYSENL  RQMYWEGSSS  TGEIVQVYQP  SQEMHQQTDN  KLHDQKALAE420
IYLLSLTDHI  VTSDSSTFGY  VAQGLGGLKP  WILYKPKNNT  APERLSHHVF  VPCQWSHVSL480
ELHSMVVKLR  KISIMMKLTI  AIATCLVLCL  VLLLPSSNIS  NRHKSDLTTN  GLNNSERQSE540
KLLGGLLASG  FDEKSCLSRY  DQSMRKPSLY  KPSGYLVSKL  RSYEMLHKRC  GPGTKPYKRA600
TKQLGHNELR  SSGDECRYVV  WMPMFGLGNR  MLSLVSVFLY  ALLTDRVMLV  DQRNDITDLF660
CEPFPETSWL  LPLDFPLTDQ  LDGFNREHSR  CYGTMLKNHA  INSTTIPSHL  YLDIFHDSRD720
QDKRFFCEED  QAFLGKVPWL  VVKSNLYFVP  SLWMIPSFQT  KLIKLFPQKE  TVFHHLARYL780
FHPTNQVWGM  VTRSYNAYLS  RADARVGIQV  RVFSKPAGYF  QHVMDQILSC  TQREKLLPEL840
ATPETQVTNT  SRSLKLKAVL  VTSLHPEYSD  HLKNMFLEQP  SSTGEIIEVY  QPSGEKIQQT900
DKKLHDQKAL  AEIYLLSLTD  ELVTSTRSTF  GYVAQGLGGL  KPWILYEPWE  KKTPNPPCVK960
AMSMEPCFLR  APLHGCQAKT  IKITPFVRFC  EDWKTGLKLV  DVSDEL1006

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT37(34-466)+GT37(523-978)

MKLMITIVTC  LLLWSLMLLS  FFIIFNHQLL  NATTNGSTDS  GKPRDKLLGR  LLTDEFDENS60
CLSRYQSSLY  RKPSPYKPSR  YLVSKLRSYE  MLHKRCGPGT  KAYKKATESL  GENYSSKSVG120
ECRYIVWIAV  YGLGNRVLTL  AALFLYALLT  DRIMLVDQRK  DINDLLCEPF  PGTSWLLPLD180
FPLTDQLDSF  DRESPRCYGT  MLKNNAINST  TIIHSYLCLY  LIHDYDDYDK  MFFCEKDQLL240
IRQVPWLVFN  SNLYFIPSLW  LIPSFQSELS  KLFPQKETVF  HHLGRYLFHP  TNQVWGMITR300
AYNAYLSRAD  ERLGIQVRVF  SKPAGYFQHV  MEQILACTQR  EKLLPEVSVS  ESQVTNNTSR360
SLKLKAVLVT  SLYPEYSENL  RQMYWEGSSS  TGEIVQVYQP  SQEMHQQTDN  KLHDQKALAE420
IYLLSLTDHI  VTSDSSTFGY  VAQGLGGLKP  WILYKPKNNT  APERLSHHVF  VPCQWSHVSL480
ELHSMVVKLR  KISIMMKLTI  AIATCLVLCL  VLLLPSSNIS  NRHKSDLTTN  GLNNSERQSE540
KLLGGLLASG  FDEKSCLSRY  DQSMRKPSLY  KPSGYLVSKL  RSYEMLHKRC  GPGTKPYKRA600
TKQLGHNELR  SSGDECRYVV  WMPMFGLGNR  MLSLVSVFLY  ALLTDRVMLV  DQRNDITDLF660
CEPFPETSWL  LPLDFPLTDQ  LDGFNREHSR  CYGTMLKNHA  INSTTIPSHL  YLDIFHDSRD720
QDKRFFCEED  QAFLGKVPWL  VVKSNLYFVP  SLWMIPSFQT  KLIKLFPQKE  TVFHHLARYL780
FHPTNQVWGM  VTRSYNAYLS  RADARVGIQV  RVFSKPAGYF  QHVMDQILSC  TQREKLLPEL840
ATPETQVTNT  SRSLKLKAVL  VTSLHPEYSD  HLKNMFLEQP  SSTGEIIEVY  QPSGEKIQQT900
DKKLHDQKAL  AEIYLLSLTD  ELVTSTRSTF  GYVAQGLGGL  KPWILYEPWE  KKTPNPPCVK960
AMSMEPCFLR  APLHGCQAKT  IKITPFVRFC  EDWKTGLKLV  DVSDEL1006

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help