Information for CAZyme ID: CAE27865.1
Basic Information
GenBank ID | CAE27865.1 |
Family | GH50 |
Sequence Length | 475 |
UniProt ID | Q6N739(100,100)![]() |
Average pLDDT? | 91.52 |
CAZy50 ID | 74317 |
CAZy50 Rep | Yes, CAE27865.1 |
Structure Cluster | SC_GH50_clus1 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 258594 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Alphaproteobacteria |
Order | Hyphomicrobiales |
Family | Nitrobacteraceae |
Genus | Rhodopseudomonas |
Species | Rhodopseudomonas palustris |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MTGVNVTAPQ PSEDLRGQQG AAAHGADRHD GMTELARTRW GGLADRKAEA SGFFRTEQID | 60 |
GVWWFIDPDG GRFLSKGVVS VQFDHDNVQG TDRRPYREAC TRKYGGREAW RRVAADRLTS | 120 |
WGFNTLGAWS EPEIARAGAV PLASAAGVVY VATAFGEQRG GWPLCDIFEP EFEQFARAHA | 180 |
RKVCTPQSDD PHVLGWFTDN ELPWGPDWRG ENELLPTILR AMDAPFSRRA ALALLKSRYD | 240 |
SIDQFNAAWQ CKLPSWDDLA ATPLQPPPFS RNFFSNDRAQ EHDPIARGYF ADCDAFAGLL | 300 |
AERYLSVCAT AIRAADPNHL VLGARFAYVP PRDVVDAAGR YCDVISVNCY DPLPDAVIDG | 360 |
YAETGRPCLI GEYSFRGDDA GLPNTHGAGP RMPTQRERAA GFTRYTTAAL RHPALIGYHW | 420 |
FVHADQPAQG RWDGEDSNYG VVTIEDEVYP ELTQAMTALN VEAERIHAET APVLA | 475 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.52 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MTGVNVTAPQ PSEDLRGQQG AAAHGADRHD GMTELARTRW GGLADRKAEA SGFFRTEQID | 60 |
GVWWFIDPDG GRFLSKGVVS VQFDHDNVQG TDRRPYREAC TRKYGGREAW RRVAADRLTS | 120 |
WGFNTLGAWS EPEIARAGAV PLASAAGVVY VATAFGEQRG GWPLCDIFEP EFEQFARAHA | 180 |
RKVCTPQSDD PHVLGWFTDN ELPWGPDWRG ENELLPTILR AMDAPFSRRA ALALLKSRYD | 240 |
SIDQFNAAWQ CKLPSWDDLA ATPLQPPPFS RNFFSNDRAQ EHDPIARGYF ADCDAFAGLL | 300 |
AERYLSVCAT AIRAADPNHL VLGARFAYVP PRDVVDAAGR YCDVISVNCY DPLPDAVIDG | 360 |
YAETGRPCLI GEYSFRGDDA GLPNTHGAGP RMPTQRERAA GFTRYTTAAL RHPALIGYHW | 420 |
FVHADQPAQG RWDGEDSNYG VVTIEDEVYP ELTQAMTALN VEAERIHAET APVLA | 475 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.