CAZyme3D

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Entry ID

Information for CAZyme ID: CAE27865.1

Basic Information

GenBank IDCAE27865.1
FamilyGH50
Sequence Length475
UniProt IDQ6N739(100,100)Download
Average pLDDT?91.52
CAZy50 ID74317
CAZy50 RepYes, CAE27865.1
Structure ClusterSC_GH50_clus1
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID258594
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusRhodopseudomonas
SpeciesRhodopseudomonas palustris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTGVNVTAPQ  PSEDLRGQQG  AAAHGADRHD  GMTELARTRW  GGLADRKAEA  SGFFRTEQID60
GVWWFIDPDG  GRFLSKGVVS  VQFDHDNVQG  TDRRPYREAC  TRKYGGREAW  RRVAADRLTS120
WGFNTLGAWS  EPEIARAGAV  PLASAAGVVY  VATAFGEQRG  GWPLCDIFEP  EFEQFARAHA180
RKVCTPQSDD  PHVLGWFTDN  ELPWGPDWRG  ENELLPTILR  AMDAPFSRRA  ALALLKSRYD240
SIDQFNAAWQ  CKLPSWDDLA  ATPLQPPPFS  RNFFSNDRAQ  EHDPIARGYF  ADCDAFAGLL300
AERYLSVCAT  AIRAADPNHL  VLGARFAYVP  PRDVVDAAGR  YCDVISVNCY  DPLPDAVIDG360
YAETGRPCLI  GEYSFRGDDA  GLPNTHGAGP  RMPTQRERAA  GFTRYTTAAL  RHPALIGYHW420
FVHADQPAQG  RWDGEDSNYG  VVTIEDEVYP  ELTQAMTALN  VEAERIHAET  APVLA475

Predicted 3D structure by AlphaFold2 with pLDDT = 91.52 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTGVNVTAPQ  PSEDLRGQQG  AAAHGADRHD  GMTELARTRW  GGLADRKAEA  SGFFRTEQID60
GVWWFIDPDG  GRFLSKGVVS  VQFDHDNVQG  TDRRPYREAC  TRKYGGREAW  RRVAADRLTS120
WGFNTLGAWS  EPEIARAGAV  PLASAAGVVY  VATAFGEQRG  GWPLCDIFEP  EFEQFARAHA180
RKVCTPQSDD  PHVLGWFTDN  ELPWGPDWRG  ENELLPTILR  AMDAPFSRRA  ALALLKSRYD240
SIDQFNAAWQ  CKLPSWDDLA  ATPLQPPPFS  RNFFSNDRAQ  EHDPIARGYF  ADCDAFAGLL300
AERYLSVCAT  AIRAADPNHL  VLGARFAYVP  PRDVVDAAGR  YCDVISVNCY  DPLPDAVIDG360
YAETGRPCLI  GEYSFRGDDA  GLPNTHGAGP  RMPTQRERAA  GFTRYTTAAL  RHPALIGYHW420
FVHADQPAQG  RWDGEDSNYG  VVTIEDEVYP  ELTQAMTALN  VEAERIHAET  APVLA475

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(94-463)

MTGVNVTAPQ  PSEDLRGQQG  AAAHGADRHD  GMTELARTRW  GGLADRKAEA  SGFFRTEQID60
GVWWFIDPDG  GRFLSKGVVS  VQFDHDNVQG  TDRRPYREAC  TRKYGGREAW  RRVAADRLTS120
WGFNTLGAWS  EPEIARAGAV  PLASAAGVVY  VATAFGEQRG  GWPLCDIFEP  EFEQFARAHA180
RKVCTPQSDD  PHVLGWFTDN  ELPWGPDWRG  ENELLPTILR  AMDAPFSRRA  ALALLKSRYD240
SIDQFNAAWQ  CKLPSWDDLA  ATPLQPPPFS  RNFFSNDRAQ  EHDPIARGYF  ADCDAFAGLL300
AERYLSVCAT  AIRAADPNHL  VLGARFAYVP  PRDVVDAAGR  YCDVISVNCY  DPLPDAVIDG360
YAETGRPCLI  GEYSFRGDDA  GLPNTHGAGP  RMPTQRERAA  GFTRYTTAAL  RHPALIGYHW420
FVHADQPAQG  RWDGEDSNYG  VVTIEDEVYP  ELTQAMTALN  VEAERIHAET  APVLA475

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help