CAZyme3D

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Entry ID

Information for CAZyme ID: CAD7260192.1

Basic Information

GenBank IDCAD7260192.1
FamilyAA3_2
Sequence Length313
UniProt IDA0A7R9AU62(100,100)Download
Average pLDDT?79.56
CAZy50 ID150356
CAZy50 RepYes, CAD7260192.1
Structure ClusterSC_AA3_clus36
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID629360
KingdomEukaryota
PhylumArthropoda
ClassInsecta
OrderPhasmatodea
FamilyTimematidae
GenusTimema
SpeciesTimema shepardi

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLGKVLGGSS  VINAMIYVRG  NKIDYDNWVY  LGNVGWSFDE  VLPYFKKSEK  LEDDEVLKDD60
TAREYHGTDG  YLPVNKFRHR  YPVVKAIIEA  ASEMGYKELI  DHNSNHGEGY  GEYHLSTKDG120
RRWNNAKAFL  EPEKGRHNVH  VTKNSHATKI  LIDPKTKTAY  GVQFKKGDKL  TEKEAELLDL180
KFEGCKSFKF  NTRKYCECEV  IFLSTTLYHP  VGTCKMGPSR  DLEAVVDLEL  TVYGVKQLRV240
VDALIMPDIV  TGNIHAATIM  IAEKASDLPA  NVHCKKDGRR  QSVRNCHSDS  SRSRGGLSAT300
RLHKRKRVWS  AEI313

Predicted 3D structure by AlphaFold2 with pLDDT = 79.56 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLGKVLGGSS  VINAMIYVRG  NKIDYDNWVY  LGNVGWSFDE  VLPYFKKSEK  LEDDEVLKDD60
TAREYHGTDG  YLPVNKFRHR  YPVVKAIIEA  ASEMGYKELI  DHNSNHGEGY  GEYHLSTKDG120
RRWNNAKAFL  EPEKGRHNVH  VTKNSHATKI  LIDPKTKTAY  GVQFKKGDKL  TEKEAELLDL180
KFEGCKSFKF  NTRKYCECEV  IFLSTTLYHP  VGTCKMGPSR  DLEAVVDLEL  TVYGVKQLRV240
VDALIMPDIV  TGNIHAATIM  IAEKASDLPA  NVHCKKDGRR  QSVRNCHSDS  SRSRGGLSAT300
RLHKRKRVWS  AEI313

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MLGKVLGGSS  VINAMIYVRG  NKIDYDNWVY  LGNVGWSFDE  VLPYFKKSEK  LEDDEVLKDD60
TAREYHGTDG  YLPVNKFRHR  YPVVKAIIEA  ASEMGYKELI  DHNSNHGEGY  GEYHLSTKDG120
RRWNNAKAFL  EPEKGRHNVH  VTKNSHATKI  LIDPKTKTAY  GVQFKKGDKL  TEKEAELLDL180
KFEGCKSFKF  NTRKYCECEV  IFLSTTLYHP  VGTCKMGPSR  DLEAVVDLEL  TVYGVKQLRV240
VDALIMPDIV  TGNIHAATIM  IAEKASDLPA  NVHCKKDGRR  QSVRNCHSDS  SRSRGGLSAT300
RLHKRKRVWS  AEI313

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help