CAZyme3D

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Entry ID

Information for CAZyme ID: CAD7253544.1

Basic Information

GenBank IDCAD7253544.1
FamilyAA3_2
Sequence Length466
UniProt IDA0A7R9AG01(100,100)Download
Average pLDDT?68.11
CAZy50 ID76327
CAZy50 RepYes, CAD7253544.1
Structure ClusterSC_AA3_clus106
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID69355
KingdomEukaryota
PhylumArthropoda
ClassOstracoda
OrderPodocopida
FamilyDarwinulidae
GenusDarwinula
SpeciesDarwinula stevensoni

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

DKRRTWLRRL  LVDRNGGPRG  GESLILSQQV  FPSEKKERRK  RYWKCKEVGG  GTTGSVIASR60
LSENPWAKVL  VIEAGSDGSK  LSLIPPFASF  MWWFTKFDYA  YSSEPQEDSC  LALKEGRCRW120
FRGRMLGGTS  SMNGALYVRG  NRKDYDNWAS  LGNPGWSFND  LLPLFKRAEN  FLIEDIPDAD180
VAYHGTDGYF  PVSHTYITHV  LPAFIEAGQS  AGFPYNEDYN  GAFQKGNASS  DDVTLYKSRD240
GATIIPGGST  IAWIAGSDRV  HDGNLSRSDV  QEELAQRGFS  QVQVAAKRGI  RYSTARAYLT300
PVKRRRNLHV  VLNTPVAKIV  IDESTKTAKG  IEFLAVDGSK  RFVSATKEVI  LSAGAVASPQ360
ILMLSGIGPK  DELDRYQIRS  LVNLPVGENL  QSHAGPGGLY  FSFTQKEGYY  VPQILTVDLI420
PSVLNYLLKG  QGRSVGHDYR  SQVLFSGKNR  ISHSDSNSAQ  QEYIKG466

Predicted 3D structure by AlphaFold2 with pLDDT = 68.11 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

DKRRTWLRRL  LVDRNGGPRG  GESLILSQQV  FPSEKKERRK  RYWKCKEVGG  GTTGSVIASR60
LSENPWAKVL  VIEAGSDGSK  LSLIPPFASF  MWWFTKFDYA  YSSEPQEDSC  LALKEGRCRW120
FRGRMLGGTS  SMNGALYVRG  NRKDYDNWAS  LGNPGWSFND  LLPLFKRAEN  FLIEDIPDAD180
VAYHGTDGYF  PVSHTYITHV  LPAFIEAGQS  AGFPYNEDYN  GAFQKGNASS  DDVTLYKSRD240
GATIIPGGST  IAWIAGSDRV  HDGNLSRSDV  QEELAQRGFS  QVQVAAKRGI  RYSTARAYLT300
PVKRRRNLHV  VLNTPVAKIV  IDESTKTAKG  IEFLAVDGSK  RFVSATKEVI  LSAGAVASPQ360
ILMLSGIGPK  DELDRYQIRS  LVNLPVGENL  QSHAGPGGLY  FSFTQKEGYY  VPQILTVDLI420
PSVLNYLLKG  QGRSVGHDYR  SQVLFSGKNR  ISHSDSNSAQ  QEYIKG466

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

DKRRTWLRRL  LVDRNGGPRG  GESLILSQQV  FPSEKKERRK  RYWKCKEVGG  GTTGSVIASR60
LSENPWAKVL  VIEAGSDGSK  LSLIPPFASF  MWWFTKFDYA  YSSEPQEDSC  LALKEGRCRW120
FRGRMLGGTS  SMNGALYVRG  NRKDYDNWAS  LGNPGWSFND  LLPLFKRAEN  FLIEDIPDAD180
VAYHGTDGYF  PVSHTYITHV  LPAFIEAGQS  AGFPYNEDYN  GAFQKGNASS  DDVTLYKSRD240
GATIIPGGST  IAWIAGSDRV  HDGNLSRSDV  QEELAQRGFS  QVQVAAKRGI  RYSTARAYLT300
PVKRRRNLHV  VLNTPVAKIV  IDESTKTAKG  IEFLAVDGSK  RFVSATKEVI  LSAGAVASPQ360
ILMLSGIGPK  DELDRYQIRS  LVNLPVGENL  QSHAGPGGLY  FSFTQKEGYY  VPQILTVDLI420
PSVLNYLLKG  QGRSVGHDYR  SQVLFSGKNR  ISHSDSNSAQ  QEYIKG466

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help