CAZyme3D

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Entry ID

Information for CAZyme ID: CAD7252129.1

Basic Information

GenBank IDCAD7252129.1
FamilyCBM14
Sequence Length1910
UniProt IDA0A7R9AE03(100,100)Download
Average pLDDT?46.81
CAZy50 ID1761
CAZy50 RepYes, CAD7252129.1
Structure ClusterSC_CBM14_clus8
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID69355
KingdomEukaryota
PhylumArthropoda
ClassOstracoda
OrderPodocopida
FamilyDarwinulidae
GenusDarwinula
SpeciesDarwinula stevensoni

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTDARQESND  CGIYNPLDLE  FQRRRRMSRR  NMNSSVSGLA  RRSKMDWIVR  VMPIVLGCLP60
SLGQGLPPRK  SSIGTSETES  ERGILPIVRV  SAHHEQICKY  ESVDPESVVV  RSGFEEAEKR120
QILEIHNGSR  RRVASGAEKA  PNLDRKHKES  VWDSEQTRIA  RRRSDRCCDF  ERPHDEEDRP180
LTRPEWSHST  QNVFWAFGSP  RVESPWQLAL  WKRYEEAKHF  PNETVAGFRR  SEEGGIGYYT240
AMIWADSRCL  GCGATVYSPA  PAGSECDRMS  SGCPEHKYSC  SAPGLFPHPT  SWDLYYECKG300
KGEEGALRSC  SPQVVFDPGQ  RACLYKEGEV  RRKRDATSRC  YSEGLFRLGR  SCSRYYKCTK360
KKFAAGMPRP  WEQKSRMDDG  DPFTFGVGHQ  ERQKRDVHVP  WWNRFFSSFV  GVQPQQSNQI420
RSRVERASHN  SIPDKREDFE  LTQHICPEEN  LFDDHAGRCV  PRASLNRWLD  CDEDTSSETS480
SESRRHVTRQ  APEVRCTEAG  FFLQPGTCTK  FYRCVDFLGS  GVHFTVFHFD  CGPGTVFDDR540
YNVCNHPQNV  PNLQCAEGEL  EAAVGEPEPT  GAGSQDSVEQ  QPNTGQQGPE  RRTTDQKAPG600
LPSPRQPGPE  QPSPSKQGSE  QSHRPQQGSG  KPSPPQEESA  KPSPQKGSVK  PSPQKGSGKP660
SPPQQESAKP  SPPRKESGQS  RRPPQESGKP  TPPPQGSGQT  QPYPGQKGIA  SEVTDQMKIR720
QDTTAAVSSP  RNPKVNCTEA  GFFPVPQSCQ  RFYRCVDWVG  DGSSFSVFFF  ICGPGTVFND780
ELDVCVHPGN  VAEQCPPEEQ  DLGVAEPEPE  GQPEPGVGDG  TVVQPSTSTR  RPSTSTVRPS840
TSTRRPSTST  VRPSTSTRRP  STSTVRPSTS  TRRPSTSTRR  PSTSTRRPGT  TAAASSSEES900
DEMPTTPRPN  LPDGSIPFSS  SIKVDCTAAG  LFQVPGSCIN  FYQCVDWYGN  GTVFSSFFFT960
CAPGTVFQED  IQTCIAFETL  PNPMDCPDHE  LEQLTSPQPE  PDGDDGSTLP  APEPMFTPPP1020
VKVFCTEPGL  FRLPGSCVMS  YRCVDWFGNG  TFSVYYFCCP  PGTVFDDILD  ICNYPWSIQP1080
PLMCNPDGSI  MNMTEAQIGS  TTPTTTTRRT  ATQTSTGTTA  ESSESEESTE  SDSATEETSD1140
ESSSSEESEE  SEEESSEEVS  PRPSTTTRRT  TTMRSTRRTT  TTRPTTTRRP  TTTRRPTTTR1200
RPTTTRRPTT  TRRPTTTRRP  TTTRRPTTTR  RPTTTRRPTT  TRRPTTTRRP  TTTRRPTTTR1260
RPTTSSTTTT  RSTIREPPEC  TEAGFFRVPG  TCRDFYRCVD  IYGDGLDFKV  FPISCPGGTV1320
FNEAVNTCTA  PELVQPPLEC  PEDDTTTSGT  ESTPPRASTE  TGTTETSSAE  SSEETTSTGA1380
ETSTTDTDAT  TSVTSTDVAS  TSESGETTDL  TSTTGSDATT  DATTDATTDA  TTESPTKSSP1440
DNVTCTEEGF  FPLPGSCKKF  YRCVSNEETG  EFTAHHFNCG  PGTAFDDALN  VCNHIASIQP1500
PLMCPDEDAD  ADPEPEPEAE  PASVPLLDRP  KVNCTEPGFF  RLPGSCNLFY  RCVDWFGNGT1560
AFSVFHFDCP  EGLHFHEGNN  TCNFPELIQP  PCEENATEAT  SAEQTDSTPA  ESTTTAESTS1620
AETISESEST  TEGSTTETRE  STTAETTSES  TTAPTTQTTE  TSTEITESTT  ETSTESTTET1680
SAESTTETST  ESTTETSAES  TTETSAESTT  EISAESTTET  SAESTTEISA  ESTTETSTES1740
TTETSAESTT  ETSTESTTET  STESTTETSA  ESTTETPTES  TTETSAESTT  ETPTESTTET1800
STDASTESTT  ETSAESTTET  PTESTTETST  DASTETTETT  LEPLTTTMMP  MINFSLLCGT1860
KRNHRHPVHC  NRFYTCIWDG  WNFEFVVGQC  GAGDVYDQTS  DSCVDEADAP  1910

Predicted 3D structure by AlphaFold2 with pLDDT = 46.81 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTDARQESND  CGIYNPLDLE  FQRRRRMSRR  NMNSSVSGLA  RRSKMDWIVR  VMPIVLGCLP60
SLGQGLPPRK  SSIGTSETES  ERGILPIVRV  SAHHEQICKY  ESVDPESVVV  RSGFEEAEKR120
QILEIHNGSR  RRVASGAEKA  PNLDRKHKES  VWDSEQTRIA  RRRSDRCCDF  ERPHDEEDRP180
LTRPEWSHST  QNVFWAFGSP  RVESPWQLAL  WKRYEEAKHF  PNETVAGFRR  SEEGGIGYYT240
AMIWADSRCL  GCGATVYSPA  PAGSECDRMS  SGCPEHKYSC  SAPGLFPHPT  SWDLYYECKG300
KGEEGALRSC  SPQVVFDPGQ  RACLYKEGEV  RRKRDATSRC  YSEGLFRLGR  SCSRYYKCTK360
KKFAAGMPRP  WEQKSRMDDG  DPFTFGVGHQ  ERQKRDVHVP  WWNRFFSSFV  GVQPQQSNQI420
RSRVERASHN  SIPDKREDFE  LTQHICPEEN  LFDDHAGRCV  PRASLNRWLD  CDEDTSSETS480
SESRRHVTRQ  APEVRCTEAG  FFLQPGTCTK  FYRCVDFLGS  GVHFTVFHFD  CGPGTVFDDR540
YNVCNHPQNV  PNLQCAEGEL  EAAVGEPEPT  GAGSQDSVEQ  QPNTGQQGPE  RRTTDQKAPG600
LPSPRQPGPE  QPSPSKQGSE  QSHRPQQGSG  KPSPPQEESA  KPSPQKGSVK  PSPQKGSGKP660
SPPQQESAKP  SPPRKESGQS  RRPPQESGKP  TPPPQGSGQT  QPYPGQKGIA  SEVTDQMKIR720
QDTTAAVSSP  RNPKVNCTEA  GFFPVPQSCQ  RFYRCVDWVG  DGSSFSVFFF  ICGPGTVFND780
ELDVCVHPGN  VAEQCPPEEQ  DLGVAEPEPE  GQPEPGVGDG  TVVQPSTSTR  RPSTSTVRPS840
TSTRRPSTST  VRPSTSTRRP  STSTVRPSTS  TRRPSTSTRR  PSTSTRRPGT  TAAASSSEES900
DEMPTTPRPN  LPDGSIPFSS  SIKVDCTAAG  LFQVPGSCIN  FYQCVDWYGN  GTVFSSFFFT960
CAPGTVFQED  IQTCIAFETL  PNPMDCPDHE  LEQLTSPQPE  PDGDDGSTLP  APEPMFTPPP1020
VKVFCTEPGL  FRLPGSCVMS  YRCVDWFGNG  TFSVYYFCCP  PGTVFDDILD  ICNYPWSIQP1080
PLMCNPDGSI  MNMTEAQIGS  TTPTTTTRRT  ATQTSTGTTA  ESSESEESTE  SDSATEETSD1140
ESSSSEESEE  SEEESSEEVS  PRPSTTTRRT  TTMRSTRRTT  TTRPTTTRRP  TTTRRPTTTR1200
RPTTTRRPTT  TRRPTTTRRP  TTTRRPTTTR  RPTTTRRPTT  TRRPTTTRRP  TTTRRPTTTR1260
RPTTSSTTTT  RSTIREPPEC  TEAGFFRVPG  TCRDFYRCVD  IYGDGLDFKV  FPISCPGGTV1320
FNEAVNTCTA  PELVQPPLEC  PEDDTTTSGT  ESTPPRASTE  TGTTETSSAE  SSEETTSTGA1380
ETSTTDTDAT  TSVTSTDVAS  TSESGETTDL  TSTTGSDATT  DATTDATTDA  TTESPTKSSP1440
DNVTCTEEGF  FPLPGSCKKF  YRCVSNEETG  EFTAHHFNCG  PGTAFDDALN  VCNHIASIQP1500
PLMCPDEDAD  ADPEPEPEAE  PASVPLLDRP  KVNCTEPGFF  RLPGSCNLFY  RCVDWFGNGT1560
AFSVFHFDCP  EGLHFHEGNN  TCNFPELIQP  PCEENATEAT  SAEQTDSTPA  ESTTTAESTS1620
AETISESEST  TEGSTTETRE  STTAETTSES  TTAPTTQTTE  TSTEITESTT  ETSTESTTET1680
SAESTTETST  ESTTETSAES  TTETSAESTT  EISAESTTET  SAESTTEISA  ESTTETSTES1740
TTETSAESTT  ETSTESTTET  STESTTETSA  ESTTETPTES  TTETSAESTT  ETPTESTTET1800
STDASTESTT  ETSAESTTET  PTESTTETST  DASTETTETT  LEPLTTTMMP  MINFSLLCGT1860
KRNHRHPVHC  NRFYTCIWDG  WNFEFVVGQC  GAGDVYDQTS  DSCVDEADAP  1910

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM14(282-326)+CBM14(504-555)+CBM14(740-795)+CBM14(933-975)+CBM14(1287-1334)+CBM14(1449-1494)+CBM14(1541-1586)+CBM14(1863-1906)

MTDARQESND  CGIYNPLDLE  FQRRRRMSRR  NMNSSVSGLA  RRSKMDWIVR  VMPIVLGCLP60
SLGQGLPPRK  SSIGTSETES  ERGILPIVRV  SAHHEQICKY  ESVDPESVVV  RSGFEEAEKR120
QILEIHNGSR  RRVASGAEKA  PNLDRKHKES  VWDSEQTRIA  RRRSDRCCDF  ERPHDEEDRP180
LTRPEWSHST  QNVFWAFGSP  RVESPWQLAL  WKRYEEAKHF  PNETVAGFRR  SEEGGIGYYT240
AMIWADSRCL  GCGATVYSPA  PAGSECDRMS  SGCPEHKYSC  SAPGLFPHPT  SWDLYYECKG300
KGEEGALRSC  SPQVVFDPGQ  RACLYKEGEV  RRKRDATSRC  YSEGLFRLGR  SCSRYYKCTK360
KKFAAGMPRP  WEQKSRMDDG  DPFTFGVGHQ  ERQKRDVHVP  WWNRFFSSFV  GVQPQQSNQI420
RSRVERASHN  SIPDKREDFE  LTQHICPEEN  LFDDHAGRCV  PRASLNRWLD  CDEDTSSETS480
SESRRHVTRQ  APEVRCTEAG  FFLQPGTCTK  FYRCVDFLGS  GVHFTVFHFD  CGPGTVFDDR540
YNVCNHPQNV  PNLQCAEGEL  EAAVGEPEPT  GAGSQDSVEQ  QPNTGQQGPE  RRTTDQKAPG600
LPSPRQPGPE  QPSPSKQGSE  QSHRPQQGSG  KPSPPQEESA  KPSPQKGSVK  PSPQKGSGKP660
SPPQQESAKP  SPPRKESGQS  RRPPQESGKP  TPPPQGSGQT  QPYPGQKGIA  SEVTDQMKIR720
QDTTAAVSSP  RNPKVNCTEA  GFFPVPQSCQ  RFYRCVDWVG  DGSSFSVFFF  ICGPGTVFND780
ELDVCVHPGN  VAEQCPPEEQ  DLGVAEPEPE  GQPEPGVGDG  TVVQPSTSTR  RPSTSTVRPS840
TSTRRPSTST  VRPSTSTRRP  STSTVRPSTS  TRRPSTSTRR  PSTSTRRPGT  TAAASSSEES900
DEMPTTPRPN  LPDGSIPFSS  SIKVDCTAAG  LFQVPGSCIN  FYQCVDWYGN  GTVFSSFFFT960
CAPGTVFQED  IQTCIAFETL  PNPMDCPDHE  LEQLTSPQPE  PDGDDGSTLP  APEPMFTPPP1020
VKVFCTEPGL  FRLPGSCVMS  YRCVDWFGNG  TFSVYYFCCP  PGTVFDDILD  ICNYPWSIQP1080
PLMCNPDGSI  MNMTEAQIGS  TTPTTTTRRT  ATQTSTGTTA  ESSESEESTE  SDSATEETSD1140
ESSSSEESEE  SEEESSEEVS  PRPSTTTRRT  TTMRSTRRTT  TTRPTTTRRP  TTTRRPTTTR1200
RPTTTRRPTT  TRRPTTTRRP  TTTRRPTTTR  RPTTTRRPTT  TRRPTTTRRP  TTTRRPTTTR1260
RPTTSSTTTT  RSTIREPPEC  TEAGFFRVPG  TCRDFYRCVD  IYGDGLDFKV  FPISCPGGTV1320
FNEAVNTCTA  PELVQPPLEC  PEDDTTTSGT  ESTPPRASTE  TGTTETSSAE  SSEETTSTGA1380
ETSTTDTDAT  TSVTSTDVAS  TSESGETTDL  TSTTGSDATT  DATTDATTDA  TTESPTKSSP1440
DNVTCTEEGF  FPLPGSCKKF  YRCVSNEETG  EFTAHHFNCG  PGTAFDDALN  VCNHIASIQP1500
PLMCPDEDAD  ADPEPEPEAE  PASVPLLDRP  KVNCTEPGFF  RLPGSCNLFY  RCVDWFGNGT1560
AFSVFHFDCP  EGLHFHEGNN  TCNFPELIQP  PCEENATEAT  SAEQTDSTPA  ESTTTAESTS1620
AETISESEST  TEGSTTETRE  STTAETTSES  TTAPTTQTTE  TSTEITESTT  ETSTESTTET1680
SAESTTETST  ESTTETSAES  TTETSAESTT  EISAESTTET  SAESTTEISA  ESTTETSTES1740
TTETSAESTT  ETSTESTTET  STESTTETSA  ESTTETPTES  TTETSAESTT  ETPTESTTET1800
STDASTESTT  ETSAESTTET  PTESTTETST  DASTETTETT  LEPLTTTMMP  MINFSLLCGT1860
KRNHRHPVHC  NRFYTCIWDG  WNFEFVVGQC  GAGDVYDQTS  DSCVDEADAP  1910

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help