CAZyme3D

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Entry ID

Information for CAZyme ID: CAD7251454.1

Basic Information

GenBank IDCAD7251454.1
FamilyCBM14
Sequence Length552
UniProt IDA0A7R9AC58(100,100)Download
Average pLDDT?63.69
CAZy50 ID59163
CAZy50 RepYes, CAD7251454.1
Structure ClusterSC_CBM14_clus4
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID69355
KingdomEukaryota
PhylumArthropoda
ClassOstracoda
OrderPodocopida
FamilyDarwinulidae
GenusDarwinula
SpeciesDarwinula stevensoni

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

VSKRFNDVAG  GLLTATFQRL  LHQMQQEYHI  IRAQMPRRES  ARRSHPLARK  WDIYETLSMR60
LSLLQMTLGK  HLDLNHIPFF  PGEILDEVFR  ILHYIQVTPN  IENLRAFKLT  DELFDLSEMA120
MEYFKEKIEP  ALPEISYFNS  EFWDFTFSGC  PGKLGGSSLL  ESPEEDGRNP  SELGSLEETG180
EISQPQSNMV  LRKRIRRIRQ  GMKRYNSELA  VLKQELKSCQ  KTITDQNKQI  REYSTRLDSY240
DKKFEDSSKK  FSLLLAELNK  CKTELQYWRS  KSPAISQIKC  RECGTIVSGK  EDRIQDLEDR300
RALAHQGVII  DFEEDESPAY  EYHDKVADCL  PGTSGPSKHH  HTKDQQPHSK  RKAEAKSKGK360
GRKRAQREFL  IYPESAVSHR  IDLEDRYILQ  ADLDLRLANG  VVWLASIGSC  LYEAPPIASG420
PTIPHEMKLA  VACLILSGAL  SLGVLARQAY  VLPAGMDLLG  LANPRATFSC  AGRIYGYYAD480
VDNDCKLFHV  CHPILDERNQ  LLETAHYTFA  CPNQTAFSQD  SLTCAFVDDA  LPCDQAPSFY540
DSVNALFGIL  GQ552

Predicted 3D structure by AlphaFold2 with pLDDT = 63.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

VSKRFNDVAG  GLLTATFQRL  LHQMQQEYHI  IRAQMPRRES  ARRSHPLARK  WDIYETLSMR60
LSLLQMTLGK  HLDLNHIPFF  PGEILDEVFR  ILHYIQVTPN  IENLRAFKLT  DELFDLSEMA120
MEYFKEKIEP  ALPEISYFNS  EFWDFTFSGC  PGKLGGSSLL  ESPEEDGRNP  SELGSLEETG180
EISQPQSNMV  LRKRIRRIRQ  GMKRYNSELA  VLKQELKSCQ  KTITDQNKQI  REYSTRLDSY240
DKKFEDSSKK  FSLLLAELNK  CKTELQYWRS  KSPAISQIKC  RECGTIVSGK  EDRIQDLEDR300
RALAHQGVII  DFEEDESPAY  EYHDKVADCL  PGTSGPSKHH  HTKDQQPHSK  RKAEAKSKGK360
GRKRAQREFL  IYPESAVSHR  IDLEDRYILQ  ADLDLRLANG  VVWLASIGSC  LYEAPPIASG420
PTIPHEMKLA  VACLILSGAL  SLGVLARQAY  VLPAGMDLLG  LANPRATFSC  AGRIYGYYAD480
VDNDCKLFHV  CHPILDERNQ  LLETAHYTFA  CPNQTAFSQD  SLTCAFVDDA  LPCDQAPSFY540
DSVNALFGIL  GQ552

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM14(470-529)

VSKRFNDVAG  GLLTATFQRL  LHQMQQEYHI  IRAQMPRRES  ARRSHPLARK  WDIYETLSMR60
LSLLQMTLGK  HLDLNHIPFF  PGEILDEVFR  ILHYIQVTPN  IENLRAFKLT  DELFDLSEMA120
MEYFKEKIEP  ALPEISYFNS  EFWDFTFSGC  PGKLGGSSLL  ESPEEDGRNP  SELGSLEETG180
EISQPQSNMV  LRKRIRRIRQ  GMKRYNSELA  VLKQELKSCQ  KTITDQNKQI  REYSTRLDSY240
DKKFEDSSKK  FSLLLAELNK  CKTELQYWRS  KSPAISQIKC  RECGTIVSGK  EDRIQDLEDR300
RALAHQGVII  DFEEDESPAY  EYHDKVADCL  PGTSGPSKHH  HTKDQQPHSK  RKAEAKSKGK360
GRKRAQREFL  IYPESAVSHR  IDLEDRYILQ  ADLDLRLANG  VVWLASIGSC  LYEAPPIASG420
PTIPHEMKLA  VACLILSGAL  SLGVLARQAY  VLPAGMDLLG  LANPRATFSC  AGRIYGYYAD480
VDNDCKLFHV  CHPILDERNQ  LLETAHYTFA  CPNQTAFSQD  SLTCAFVDDA  LPCDQAPSFY540
DSVNALFGIL  GQ552

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help