CAZyme3D

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Entry ID

Information for CAZyme ID: CAD7246088.1

Basic Information

GenBank IDCAD7246088.1
FamilyGH30_1
Sequence Length511
UniProt IDA0A7R8X8M4(100,100)Download
Average pLDDT?85.51
CAZy50 ID66576
CAZy50 RepYes, CAD7246088.1
Structure ClusterSC_GH30_clus73
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID69355
KingdomEukaryota
PhylumArthropoda
ClassOstracoda
OrderPodocopida
FamilyDarwinulidae
GenusDarwinula
SpeciesDarwinula stevensoni

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLLFFAKKFA  RPLSLEWYNI  ARREETTPFA  PERRIPSRVP  STDETTTRTR  VRVNRQEEYQ60
SLLGFGGAFT  DAAGLNIKSL  EPAAQELIIR  SYFAPEGIRY  NIGRIPMGGS  DFSTRPYSYD120
DVEGDEAFEF  WSLAFEDLEY  KIPLVHLARE  VSEEEVLLFG  SAWSAPRWMK  TNNDFIGEGR180
LKDEYYQLWA  DYFIKFLEAY  SAAGLDMWGL  TAGNEPTNGN  IPGFSFNCMG  WTPETQRKWV240
AENLGPTLRA  AGYGKDNLTL  MVFDDQRAYV  ETWLPTILGD  PVIGEYVSGW  AVHWYWNWLF300
GPEILDGAHA  DYPDFWILAT  EACEGSDLGE  PPVSLGNWLY  AESYAHNIIE  DLNHWVRGWV360
DWNLALDLEG  GPNWAANEVD  AGIIVNATAG  EFYKNPIFYA  LGHFSKFIPR  GSVRLGLEVA420
GAVEALATST  PEGDVVVVLL  NTPLAASSAI  DYRSARSRLS  IDDRIEMYVS  LVRFDRSGAE480
QVVEIEDGDR  FVSHTMPAKS  LVTLLWSTSV  E511

Predicted 3D structure by AlphaFold2 with pLDDT = 85.51 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLLFFAKKFA  RPLSLEWYNI  ARREETTPFA  PERRIPSRVP  STDETTTRTR  VRVNRQEEYQ60
SLLGFGGAFT  DAAGLNIKSL  EPAAQELIIR  SYFAPEGIRY  NIGRIPMGGS  DFSTRPYSYD120
DVEGDEAFEF  WSLAFEDLEY  KIPLVHLARE  VSEEEVLLFG  SAWSAPRWMK  TNNDFIGEGR180
LKDEYYQLWA  DYFIKFLEAY  SAAGLDMWGL  TAGNEPTNGN  IPGFSFNCMG  WTPETQRKWV240
AENLGPTLRA  AGYGKDNLTL  MVFDDQRAYV  ETWLPTILGD  PVIGEYVSGW  AVHWYWNWLF300
GPEILDGAHA  DYPDFWILAT  EACEGSDLGE  PPVSLGNWLY  AESYAHNIIE  DLNHWVRGWV360
DWNLALDLEG  GPNWAANEVD  AGIIVNATAG  EFYKNPIFYA  LGHFSKFIPR  GSVRLGLEVA420
GAVEALATST  PEGDVVVVLL  NTPLAASSAI  DYRSARSRLS  IDDRIEMYVS  LVRFDRSGAE480
QVVEIEDGDR  FVSHTMPAKS  LVTLLWSTSV  E511

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH30_1(49-444)

MLLFFAKKFA  RPLSLEWYNI  ARREETTPFA  PERRIPSRVP  STDETTTRTR  VRVNRQEEYQ60
SLLGFGGAFT  DAAGLNIKSL  EPAAQELIIR  SYFAPEGIRY  NIGRIPMGGS  DFSTRPYSYD120
DVEGDEAFEF  WSLAFEDLEY  KIPLVHLARE  VSEEEVLLFG  SAWSAPRWMK  TNNDFIGEGR180
LKDEYYQLWA  DYFIKFLEAY  SAAGLDMWGL  TAGNEPTNGN  IPGFSFNCMG  WTPETQRKWV240
AENLGPTLRA  AGYGKDNLTL  MVFDDQRAYV  ETWLPTILGD  PVIGEYVSGW  AVHWYWNWLF300
GPEILDGAHA  DYPDFWILAT  EACEGSDLGE  PPVSLGNWLY  AESYAHNIIE  DLNHWVRGWV360
DWNLALDLEG  GPNWAANEVD  AGIIVNATAG  EFYKNPIFYA  LGHFSKFIPR  GSVRLGLEVA420
GAVEALATST  PEGDVVVVLL  NTPLAASSAI  DYRSARSRLS  IDDRIEMYVS  LVRFDRSGAE480
QVVEIEDGDR  FVSHTMPAKS  LVTLLWSTSV  E511

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help