CAZyme3D

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Entry ID

Information for CAZyme ID: CAD7227598.1

Basic Information

GenBank IDCAD7227598.1
FamilyGT13
Sequence Length521
UniProt IDA0A7R8WAW4(100,100)Download
Average pLDDT?76.71
CAZy50 ID64632
CAZy50 RepYes, CAD7227598.1
Structure ClusterSC_GT13_clus17
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID163714
KingdomEukaryota
PhylumArthropoda
ClassOstracoda
OrderPodocopida
FamilyCytherideidae
GenusCyprideis
SpeciesCyprideis torosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLFGIMRYRR  KIISAAVVIS  LTLWAAGFLL  LVFSDFGVKR  FGWGSPFPSS  KLEGLSSKEL60
STQLTELERQ  LELQKIARSV  IFDKLRSLGI  DTNILKELRA  RRKFITDEEL  SALLEQKYLV120
NNNPKDGATG  RLKNEVLMQP  HSQHKQPSQA  LKEEARSGPL  SNFQLPILVM  ACNRVNVTRA180
LDLLINHRPD  PERFPIIVSQ  DCGDETTAKL  IRGYGNEVKL  IQQPDQSFPK  IPPGIRKPQP240
GYYRIARHYH  WAFDQIFYEF  HFSAAVIVED  DLEIASDFYE  YFSATLPLLI  ADKTLFCVSA300
WNDNGKEKNI  DLSENGAMKL  YRTDFFPGLG  WMLTKDLWDE  LSIKWPNAYW  DDWLREPEQR360
KSRQCIRPEI  SRTKTFGKKG  VSNGQYFEQH  LKYIVLNDHF  VPFTQMDLTY  LLDENYAASF420
TTEVNRARVV  SLAEIRVLKQ  QEVVPIDQAL  KIRYDSYQSY  RQLARILGIM  DDLKAGVPRT480
AYKGIVTVFF  RGRRIFIVPP  TSWKGYTVPP  PPDKKRPLSE  V521

Predicted 3D structure by AlphaFold2 with pLDDT = 76.71 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLFGIMRYRR  KIISAAVVIS  LTLWAAGFLL  LVFSDFGVKR  FGWGSPFPSS  KLEGLSSKEL60
STQLTELERQ  LELQKIARSV  IFDKLRSLGI  DTNILKELRA  RRKFITDEEL  SALLEQKYLV120
NNNPKDGATG  RLKNEVLMQP  HSQHKQPSQA  LKEEARSGPL  SNFQLPILVM  ACNRVNVTRA180
LDLLINHRPD  PERFPIIVSQ  DCGDETTAKL  IRGYGNEVKL  IQQPDQSFPK  IPPGIRKPQP240
GYYRIARHYH  WAFDQIFYEF  HFSAAVIVED  DLEIASDFYE  YFSATLPLLI  ADKTLFCVSA300
WNDNGKEKNI  DLSENGAMKL  YRTDFFPGLG  WMLTKDLWDE  LSIKWPNAYW  DDWLREPEQR360
KSRQCIRPEI  SRTKTFGKKG  VSNGQYFEQH  LKYIVLNDHF  VPFTQMDLTY  LLDENYAASF420
TTEVNRARVV  SLAEIRVLKQ  QEVVPIDQAL  KIRYDSYQSY  RQLARILGIM  DDLKAGVPRT480
AYKGIVTVFF  RGRRIFIVPP  TSWKGYTVPP  PPDKKRPLSE  V521

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT13(145-504)

MLFGIMRYRR  KIISAAVVIS  LTLWAAGFLL  LVFSDFGVKR  FGWGSPFPSS  KLEGLSSKEL60
STQLTELERQ  LELQKIARSV  IFDKLRSLGI  DTNILKELRA  RRKFITDEEL  SALLEQKYLV120
NNNPKDGATG  RLKNEVLMQP  HSQHKQPSQA  LKEEARSGPL  SNFQLPILVM  ACNRVNVTRA180
LDLLINHRPD  PERFPIIVSQ  DCGDETTAKL  IRGYGNEVKL  IQQPDQSFPK  IPPGIRKPQP240
GYYRIARHYH  WAFDQIFYEF  HFSAAVIVED  DLEIASDFYE  YFSATLPLLI  ADKTLFCVSA300
WNDNGKEKNI  DLSENGAMKL  YRTDFFPGLG  WMLTKDLWDE  LSIKWPNAYW  DDWLREPEQR360
KSRQCIRPEI  SRTKTFGKKG  VSNGQYFEQH  LKYIVLNDHF  VPFTQMDLTY  LLDENYAASF420
TTEVNRARVV  SLAEIRVLKQ  QEVVPIDQAL  KIRYDSYQSY  RQLARILGIM  DDLKAGVPRT480
AYKGIVTVFF  RGRRIFIVPP  TSWKGYTVPP  PPDKKRPLSE  V521

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help