CAZyme3D

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Entry ID

Information for CAZyme ID: CAD7224981.1

Basic Information

GenBank IDCAD7224981.1
FamilyAA3_2
Sequence Length1230
UniProt IDA0A7R8W532(100,100)Download
Average pLDDT?60.89
CAZy50 ID7305
CAZy50 RepYes, CAD7224981.1
Structure ClusterSC_AA3_clus25
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID163714
KingdomEukaryota
PhylumArthropoda
ClassOstracoda
OrderPodocopida
FamilyCytherideidae
GenusCyprideis
SpeciesCyprideis torosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAEEEDVPDS  WEEVEDTHII  DKKIEKMRQK  TNSELSSSSL  RPDADIFLPG  KICQMPYGNG60
FRPPFRPPYG  QTPPVRILKR  DDDSSLVPVR  SEDSSKPKTK  IKSLKEDFVE  YFMAGTAKTK120
SVLRAAEKHS  ISVRYCWKII  EANGILVPSP  KKMGRPKRQT  TRSSGHSNKL  HRKLHFKEMR180
RTVHNLWTCE  KTKREISRIT  EVPRSSVQRI  LKGTPSTPRR  RGQKKLALRK  ADSFHIDFVR240
RTLQNFHKEG  KKPTLEKIRN  RVIQDDPQFP  YRSTASFHRL  LLRNGMKFRR  LKRRNLLVLN300
DNLIQRRNQY  LRKVQELRNQ  NYLLIYLDET  WYDSHDLGNY  SWCEESQIVP  RPTDEVFGLN360
YLRGQSSEGL  IDPDTNDDDL  ENVEDADEAA  QFIPGLDLGS  AYLGAELMIG  GDSPSMGPSV420
EEEDEVHRRA  LTFESKVRTT  STTGRFQRKK  RSSHGLLTSQ  LGYWIGAQRS  QEASQFHWVA480
PEDTKAPPAA  ATSSSSTAFL  NGAFQASFSS  LAASGTSLAF  ASSDTFRCPD  CGRECMGQAA540
SASLGQHMRY  DCGPRTNACS  YCHRHFKRRF  HLERHMSKVH  AATLHELSYS  RLLRKQRTYA600
CFVDFSKALD  SGSRPLLFQR  LQLLGFPYQQ  CLLLHNPFRS  LQIREEVQDL  VKNVMKLVLD660
FHDGQMERTS  AEVKGLEEMM  ETRLPEARGD  ETFVSDIPSL  SYYLHNTPMD  WAYKTEPMDT720
ACLGLIQNRS  NWPRGKVLGG  SSTINTMLYV  RGNQLDYDLY  EQAGNYGWNW  DTALYYFKKS780
EGNRNQYLAA  NTRYHNDKGP  LTVQEAMWRS  PLSPALVEGM  VQYGIPNRDF  NAGIQKGVMI840
NQLTQRHGAR  CSTNKAFLKP  ARRRPNLHIV  KRAFVTRVLF  KGNNRAYGVK  YEKYGHFYIT900
TARKEVILSA  GAIGSPQILM  LSGIGPREHL  EELGIPVRQD  LKVGYNLQDH  MYVIGAPIFL960
VNQPVTVITS  RLETIKAVLK  YALFGKGPLT  TSIGLEVIAF  VNTKYANESI  DFPDVEYEFL1020
ASSIVSDGGQ  RVAQNTGYNE  RVWHEYFKPI  AFRDAWSSVT  ALLRPRSKGV  IKLRSRNPYD1080
YPRIWANYLT  DPFDTATMVE  AMKILIAFSK  TPAMQAYGSK  LYSTPIPGCE  HLDLWSDPYL1140
ECLVRHMSTT  NYHPSCTAKM  GPWWDPEAVV  DPELRVYGTR  NLRVIDASIF  PNIPSANLNA1200
PTIMVGERGA  DLIKIAWGLS  VDSYEHDNKV  1230

Predicted 3D structure by AlphaFold2 with pLDDT = 60.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MAEEEDVPDS  WEEVEDTHII  DKKIEKMRQK  TNSELSSSSL  RPDADIFLPG  KICQMPYGNG60
FRPPFRPPYG  QTPPVRILKR  DDDSSLVPVR  SEDSSKPKTK  IKSLKEDFVE  YFMAGTAKTK120
SVLRAAEKHS  ISVRYCWKII  EANGILVPSP  KKMGRPKRQT  TRSSGHSNKL  HRKLHFKEMR180
RTVHNLWTCE  KTKREISRIT  EVPRSSVQRI  LKGTPSTPRR  RGQKKLALRK  ADSFHIDFVR240
RTLQNFHKEG  KKPTLEKIRN  RVIQDDPQFP  YRSTASFHRL  LLRNGMKFRR  LKRRNLLVLN300
DNLIQRRNQY  LRKVQELRNQ  NYLLIYLDET  WYDSHDLGNY  SWCEESQIVP  RPTDEVFGLN360
YLRGQSSEGL  IDPDTNDDDL  ENVEDADEAA  QFIPGLDLGS  AYLGAELMIG  GDSPSMGPSV420
EEEDEVHRRA  LTFESKVRTT  STTGRFQRKK  RSSHGLLTSQ  LGYWIGAQRS  QEASQFHWVA480
PEDTKAPPAA  ATSSSSTAFL  NGAFQASFSS  LAASGTSLAF  ASSDTFRCPD  CGRECMGQAA540
SASLGQHMRY  DCGPRTNACS  YCHRHFKRRF  HLERHMSKVH  AATLHELSYS  RLLRKQRTYA600
CFVDFSKALD  SGSRPLLFQR  LQLLGFPYQQ  CLLLHNPFRS  LQIREEVQDL  VKNVMKLVLD660
FHDGQMERTS  AEVKGLEEMM  ETRLPEARGD  ETFVSDIPSL  SYYLHNTPMD  WAYKTEPMDT720
ACLGLIQNRS  NWPRGKVLGG  SSTINTMLYV  RGNQLDYDLY  EQAGNYGWNW  DTALYYFKKS780
EGNRNQYLAA  NTRYHNDKGP  LTVQEAMWRS  PLSPALVEGM  VQYGIPNRDF  NAGIQKGVMI840
NQLTQRHGAR  CSTNKAFLKP  ARRRPNLHIV  KRAFVTRVLF  KGNNRAYGVK  YEKYGHFYIT900
TARKEVILSA  GAIGSPQILM  LSGIGPREHL  EELGIPVRQD  LKVGYNLQDH  MYVIGAPIFL960
VNQPVTVITS  RLETIKAVLK  YALFGKGPLT  TSIGLEVIAF  VNTKYANESI  DFPDVEYEFL1020
ASSIVSDGGQ  RVAQNTGYNE  RVWHEYFKPI  AFRDAWSSVT  ALLRPRSKGV  IKLRSRNPYD1080
YPRIWANYLT  DPFDTATMVE  AMKILIAFSK  TPAMQAYGSK  LYSTPIPGCE  HLDLWSDPYL1140
ECLVRHMSTT  NYHPSCTAKM  GPWWDPEAVV  DPELRVYGTR  NLRVIDASIF  PNIPSANLNA1200
PTIMVGERGA  DLIKIAWGLS  VDSYEHDNKV  1230

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(693-1214)

MAEEEDVPDS  WEEVEDTHII  DKKIEKMRQK  TNSELSSSSL  RPDADIFLPG  KICQMPYGNG60
FRPPFRPPYG  QTPPVRILKR  DDDSSLVPVR  SEDSSKPKTK  IKSLKEDFVE  YFMAGTAKTK120
SVLRAAEKHS  ISVRYCWKII  EANGILVPSP  KKMGRPKRQT  TRSSGHSNKL  HRKLHFKEMR180
RTVHNLWTCE  KTKREISRIT  EVPRSSVQRI  LKGTPSTPRR  RGQKKLALRK  ADSFHIDFVR240
RTLQNFHKEG  KKPTLEKIRN  RVIQDDPQFP  YRSTASFHRL  LLRNGMKFRR  LKRRNLLVLN300
DNLIQRRNQY  LRKVQELRNQ  NYLLIYLDET  WYDSHDLGNY  SWCEESQIVP  RPTDEVFGLN360
YLRGQSSEGL  IDPDTNDDDL  ENVEDADEAA  QFIPGLDLGS  AYLGAELMIG  GDSPSMGPSV420
EEEDEVHRRA  LTFESKVRTT  STTGRFQRKK  RSSHGLLTSQ  LGYWIGAQRS  QEASQFHWVA480
PEDTKAPPAA  ATSSSSTAFL  NGAFQASFSS  LAASGTSLAF  ASSDTFRCPD  CGRECMGQAA540
SASLGQHMRY  DCGPRTNACS  YCHRHFKRRF  HLERHMSKVH  AATLHELSYS  RLLRKQRTYA600
CFVDFSKALD  SGSRPLLFQR  LQLLGFPYQQ  CLLLHNPFRS  LQIREEVQDL  VKNVMKLVLD660
FHDGQMERTS  AEVKGLEEMM  ETRLPEARGD  ETFVSDIPSL  SYYLHNTPMD  WAYKTEPMDT720
ACLGLIQNRS  NWPRGKVLGG  SSTINTMLYV  RGNQLDYDLY  EQAGNYGWNW  DTALYYFKKS780
EGNRNQYLAA  NTRYHNDKGP  LTVQEAMWRS  PLSPALVEGM  VQYGIPNRDF  NAGIQKGVMI840
NQLTQRHGAR  CSTNKAFLKP  ARRRPNLHIV  KRAFVTRVLF  KGNNRAYGVK  YEKYGHFYIT900
TARKEVILSA  GAIGSPQILM  LSGIGPREHL  EELGIPVRQD  LKVGYNLQDH  MYVIGAPIFL960
VNQPVTVITS  RLETIKAVLK  YALFGKGPLT  TSIGLEVIAF  VNTKYANESI  DFPDVEYEFL1020
ASSIVSDGGQ  RVAQNTGYNE  RVWHEYFKPI  AFRDAWSSVT  ALLRPRSKGV  IKLRSRNPYD1080
YPRIWANYLT  DPFDTATMVE  AMKILIAFSK  TPAMQAYGSK  LYSTPIPGCE  HLDLWSDPYL1140
ECLVRHMSTT  NYHPSCTAKM  GPWWDPEAVV  DPELRVYGTR  NLRVIDASIF  PNIPSANLNA1200
PTIMVGERGA  DLIKIAWGLS  VDSYEHDNKV  1230

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help