CAZyme3D

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Entry ID

Information for CAZyme ID: CAD7195472.1

Basic Information

GenBank IDCAD7195472.1
FamilyGT50
Sequence Length395
UniProt IDA0A7R8VBS1(100,100)Download
Average pLDDT?91.72
CAZy50 ID101493
CAZy50 RepYes, CAD7195472.1
Structure ClusterSC_GT50_clus1
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID61478
KingdomEukaryota
PhylumArthropoda
ClassInsecta
OrderPhasmatodea
FamilyTimematidae
GenusTimema
SpeciesTimema douglasi

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVDIIRHCVY  GVLVRLVVII  YGTFHDKMSA  VQYTDVDYRV  FTDAARHILE  GNSPYDRHTY60
RYTPLLAYVL  VPNILLHTVW  GKVLFSLVDV  LVALLTLSLV  NDSTLSVKCA  LAWLYNPLAI120
VIATRGNADS  ISAALVLATL  VLLQKNKVVL  AGVVHALAIH  VRLYPLAFSL  PMYLSLQTSS180
KAKRKTSFLS  SLIPNCDQIC  LVGSCVGFLA  FVTGVFYWLY  GYEFLYESLL  YHLGRRDIRH240
NFSVYFYMLY  LNSHTPDSIL  QKVVMFAPQA  LLLLALSFVY  GSKRHLPFCV  LTQAYVMVTY300
NPVMTSQYFI  WFISLIPPSF  PNINLSTSRW  VALGALWGSA  QLAWLLPAYW  LEFRGRDTFI360
FVWLQGVAFF  SANVAVLAQL  IRAYKYHERE  NKKIE395

Predicted 3D structure by AlphaFold2 with pLDDT = 91.72 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVDIIRHCVY  GVLVRLVVII  YGTFHDKMSA  VQYTDVDYRV  FTDAARHILE  GNSPYDRHTY60
RYTPLLAYVL  VPNILLHTVW  GKVLFSLVDV  LVALLTLSLV  NDSTLSVKCA  LAWLYNPLAI120
VIATRGNADS  ISAALVLATL  VLLQKNKVVL  AGVVHALAIH  VRLYPLAFSL  PMYLSLQTSS180
KAKRKTSFLS  SLIPNCDQIC  LVGSCVGFLA  FVTGVFYWLY  GYEFLYESLL  YHLGRRDIRH240
NFSVYFYMLY  LNSHTPDSIL  QKVVMFAPQA  LLLLALSFVY  GSKRHLPFCV  LTQAYVMVTY300
NPVMTSQYFI  WFISLIPPSF  PNINLSTSRW  VALGALWGSA  QLAWLLPAYW  LEFRGRDTFI360
FVWLQGVAFF  SANVAVLAQL  IRAYKYHERE  NKKIE395

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT50(122-381)

MVDIIRHCVY  GVLVRLVVII  YGTFHDKMSA  VQYTDVDYRV  FTDAARHILE  GNSPYDRHTY60
RYTPLLAYVL  VPNILLHTVW  GKVLFSLVDV  LVALLTLSLV  NDSTLSVKCA  LAWLYNPLAI120
VIATRGNADS  ISAALVLATL  VLLQKNKVVL  AGVVHALAIH  VRLYPLAFSL  PMYLSLQTSS180
KAKRKTSFLS  SLIPNCDQIC  LVGSCVGFLA  FVTGVFYWLY  GYEFLYESLL  YHLGRRDIRH240
NFSVYFYMLY  LNSHTPDSIL  QKVVMFAPQA  LLLLALSFVY  GSKRHLPFCV  LTQAYVMVTY300
NPVMTSQYFI  WFISLIPPSF  PNINLSTSRW  VALGALWGSA  QLAWLLPAYW  LEFRGRDTFI360
FVWLQGVAFF  SANVAVLAQL  IRAYKYHERE  NKKIE395

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help