CAZyme3D

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Entry ID

Information for CAZyme ID: CAD1844685.1

Basic Information

GenBank IDCAD1844685.1
FamilyGT77
Sequence Length501
UniProt IDA0A6V7QPI2(100,100)Download
Average pLDDT?67.50
CAZy50 ID68718
CAZy50 RepYes, CAD1844685.1
Structure ClusterSC_GT77_clus23
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID296719
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyBromeliaceae
GenusAnanas
SpeciesAnanas comosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEPIAITATS  SSSGVGVGGG  GGGGGGGGGG  NGSAQPTPQP  LAAQGGGAAV  LLRRMVTPLL60
FLAAVALPCA  VVYRAAGPIA  PLRSAALWEP  APSPRSPRRI  LSTSSTCEDV  RLERVLNDAA120
MENKTIILTV  LNAAWASPGS  VVDLFIESFR  TGDGTRMLLN  HLVIIALDMK  AYKRCMSIHQ180
HCFALITEGV  DFSGEKNFMT  AGYLKMMWRR  IDFLRVILEK  GYSFIFSDTD  IMWFRNPLPH240
FHPDGDFQIA  CDRFMGDATD  LRNTPNGGFN  YVRSNNRSIE  FYKFWYSSRE  KHPGYHDQDV300
LNFIKRDPFI  AEIGLTIRFL  STTYFGGICE  PSRDFSKVCT  MHANCCIGLH  RKLHDLRVML360
EDWRNYMSLP  PSLKTSGAYK  WSSCTIESMI  HVHACRRTLM  SRNLLCISGI  VREINFVQQY420
KYKYNGEYYE  DDNRGCGCTF  DFGVHWYYLY  YSNLAMYFLR  RLSMVEVEFG  TLEEEVESRR480
SFQYSMYPMM  DTGIIVQEII  I501

Predicted 3D structure by AlphaFold2 with pLDDT = 67.50 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEPIAITATS  SSSGVGVGGG  GGGGGGGGGG  NGSAQPTPQP  LAAQGGGAAV  LLRRMVTPLL60
FLAAVALPCA  VVYRAAGPIA  PLRSAALWEP  APSPRSPRRI  LSTSSTCEDV  RLERVLNDAA120
MENKTIILTV  LNAAWASPGS  VVDLFIESFR  TGDGTRMLLN  HLVIIALDMK  AYKRCMSIHQ180
HCFALITEGV  DFSGEKNFMT  AGYLKMMWRR  IDFLRVILEK  GYSFIFSDTD  IMWFRNPLPH240
FHPDGDFQIA  CDRFMGDATD  LRNTPNGGFN  YVRSNNRSIE  FYKFWYSSRE  KHPGYHDQDV300
LNFIKRDPFI  AEIGLTIRFL  STTYFGGICE  PSRDFSKVCT  MHANCCIGLH  RKLHDLRVML360
EDWRNYMSLP  PSLKTSGAYK  WSSCTIESMI  HVHACRRTLM  SRNLLCISGI  VREINFVQQY420
KYKYNGEYYE  DDNRGCGCTF  DFGVHWYYLY  YSNLAMYFLR  RLSMVEVEFG  TLEEEVESRR480
SFQYSMYPMM  DTGIIVQEII  I501

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT77(159-356)

MEPIAITATS  SSSGVGVGGG  GGGGGGGGGG  NGSAQPTPQP  LAAQGGGAAV  LLRRMVTPLL60
FLAAVALPCA  VVYRAAGPIA  PLRSAALWEP  APSPRSPRRI  LSTSSTCEDV  RLERVLNDAA120
MENKTIILTV  LNAAWASPGS  VVDLFIESFR  TGDGTRMLLN  HLVIIALDMK  AYKRCMSIHQ180
HCFALITEGV  DFSGEKNFMT  AGYLKMMWRR  IDFLRVILEK  GYSFIFSDTD  IMWFRNPLPH240
FHPDGDFQIA  CDRFMGDATD  LRNTPNGGFN  YVRSNNRSIE  FYKFWYSSRE  KHPGYHDQDV300
LNFIKRDPFI  AEIGLTIRFL  STTYFGGICE  PSRDFSKVCT  MHANCCIGLH  RKLHDLRVML360
EDWRNYMSLP  PSLKTSGAYK  WSSCTIESMI  HVHACRRTLM  SRNLLCISGI  VREINFVQQY420
KYKYNGEYYE  DDNRGCGCTF  DFGVHWYYLY  YSNLAMYFLR  RLSMVEVEFG  TLEEEVESRR480
SFQYSMYPMM  DTGIIVQEII  I501

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help