CAZyme3D

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Entry ID

Information for CAZyme ID: CAD1826956.1

Basic Information

GenBank IDCAD1826956.1
FamilyGH5_14
Sequence Length904
UniProt IDA0A6V7P8F5(100,100)Download
Average pLDDT?62.61
CAZy50 ID19132
CAZy50 RepYes, CAD1826956.1
Structure ClusterSC_GH5_clus249
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID296719
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyBromeliaceae
GenusAnanas
SpeciesAnanas comosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAFSPPPPRR  LIMAWVSSVL  MLCWFLFPFT  PSSAHGFNKV  RGVNLGGWLV  VEGWIKPSLF60
DGIPNGDMLA  TMDNLLTSNY  QLEPGWDDNS  ATFEMIIVAN  TLHGDYQLAN  GYGYNQANDV120
LTRHRDSFIT  ASDFDFLSQC  GINTVRIPVG  WWIAQDPYPP  APFVGGSLAA  LDRAFSWAQT180
YNLKCIIDLH  AAPGSQNGNE  HSASRDGSVD  WPSPDYISQT  LHVIDFLSAR  YANHPSLLGI240
ELLNEPSAPA  VALDVLASFY  RRGYEIVRNY  SSTAYVIMCQ  RIGNTDPMEL  FQANIGVSNI300
VVDLHYYNLF  DPFFNNFNAL  ENIQFIFKSR  APQLQALNSL  NGPLVFVGEW  VNEWNVPNAS360
QIQYQLFGRA  QLDVYNNASF  GWSYWTLKND  RVHWDFEWNI  KNKYLSLGKS  WVKRPNYLLV420
LALKHLARGS  PWRSGTGLAF  PSPPLPPPAA  SRRGVEARHG  PTLAPLHRRH  ERLLRPASFN480
PSVAILIVVL  VSAFFFLGFF  SIYIRRCGGD  PFGPGGGGVS  LRAGVSALGG  VMARSRRQRG540
LDPAVLETFP  TLAFAEVKEL  RIGKGSLECA  VCLSEFEDDE  TLRLLPTCSH  AFHPDCIDAW600
LASHVTCPVC  RCNLVPDPAA  APSPPSAADL  DPAPAPAPDS  TGAEDAAEPT  PLAREGEGEV660
VIDVADEERE  EERRKQEAIE  LQRIGSQRQA  MRARSGRRPA  RFPRSHSTGH  SLTTTTTTAP720
APAMVAAPEA  EGNPDRYTLR  LPEHIRREIV  AAGRLKRTRS  LLAFPSGGEE  SSRRGYRGGG780
GGGGGEGSSR  EGRSVRLGRS  ERWPNFFTRT  FSARVPAWAS  GRRSVEGSVK  KGEGEGSTRG840
KLAAAVAPFD  CFVGGGAASA  SKGGAGEEDD  EFFVVNSQTM  THVTHAQYNE  TGVIDRMTWR900
CGDR904

Predicted 3D structure by AlphaFold2 with pLDDT = 62.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MAFSPPPPRR  LIMAWVSSVL  MLCWFLFPFT  PSSAHGFNKV  RGVNLGGWLV  VEGWIKPSLF60
DGIPNGDMLA  TMDNLLTSNY  QLEPGWDDNS  ATFEMIIVAN  TLHGDYQLAN  GYGYNQANDV120
LTRHRDSFIT  ASDFDFLSQC  GINTVRIPVG  WWIAQDPYPP  APFVGGSLAA  LDRAFSWAQT180
YNLKCIIDLH  AAPGSQNGNE  HSASRDGSVD  WPSPDYISQT  LHVIDFLSAR  YANHPSLLGI240
ELLNEPSAPA  VALDVLASFY  RRGYEIVRNY  SSTAYVIMCQ  RIGNTDPMEL  FQANIGVSNI300
VVDLHYYNLF  DPFFNNFNAL  ENIQFIFKSR  APQLQALNSL  NGPLVFVGEW  VNEWNVPNAS360
QIQYQLFGRA  QLDVYNNASF  GWSYWTLKND  RVHWDFEWNI  KNKYLSLGKS  WVKRPNYLLV420
LALKHLARGS  PWRSGTGLAF  PSPPLPPPAA  SRRGVEARHG  PTLAPLHRRH  ERLLRPASFN480
PSVAILIVVL  VSAFFFLGFF  SIYIRRCGGD  PFGPGGGGVS  LRAGVSALGG  VMARSRRQRG540
LDPAVLETFP  TLAFAEVKEL  RIGKGSLECA  VCLSEFEDDE  TLRLLPTCSH  AFHPDCIDAW600
LASHVTCPVC  RCNLVPDPAA  APSPPSAADL  DPAPAPAPDS  TGAEDAAEPT  PLAREGEGEV660
VIDVADEERE  EERRKQEAIE  LQRIGSQRQA  MRARSGRRPA  RFPRSHSTGH  SLTTTTTTAP720
APAMVAAPEA  EGNPDRYTLR  LPEHIRREIV  AAGRLKRTRS  LLAFPSGGEE  SSRRGYRGGG780
GGGGGEGSSR  EGRSVRLGRS  ERWPNFFTRT  FSARVPAWAS  GRRSVEGSVK  KGEGEGSTRG840
KLAAAVAPFD  CFVGGGAASA  SKGGAGEEDD  EFFVVNSQTM  THVTHAQYNE  TGVIDRMTWR900
CGDR904

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_14(119-396)

MAFSPPPPRR  LIMAWVSSVL  MLCWFLFPFT  PSSAHGFNKV  RGVNLGGWLV  VEGWIKPSLF60
DGIPNGDMLA  TMDNLLTSNY  QLEPGWDDNS  ATFEMIIVAN  TLHGDYQLAN  GYGYNQANDV120
LTRHRDSFIT  ASDFDFLSQC  GINTVRIPVG  WWIAQDPYPP  APFVGGSLAA  LDRAFSWAQT180
YNLKCIIDLH  AAPGSQNGNE  HSASRDGSVD  WPSPDYISQT  LHVIDFLSAR  YANHPSLLGI240
ELLNEPSAPA  VALDVLASFY  RRGYEIVRNY  SSTAYVIMCQ  RIGNTDPMEL  FQANIGVSNI300
VVDLHYYNLF  DPFFNNFNAL  ENIQFIFKSR  APQLQALNSL  NGPLVFVGEW  VNEWNVPNAS360
QIQYQLFGRA  QLDVYNNASF  GWSYWTLKND  RVHWDFEWNI  KNKYLSLGKS  WVKRPNYLLV420
LALKHLARGS  PWRSGTGLAF  PSPPLPPPAA  SRRGVEARHG  PTLAPLHRRH  ERLLRPASFN480
PSVAILIVVL  VSAFFFLGFF  SIYIRRCGGD  PFGPGGGGVS  LRAGVSALGG  VMARSRRQRG540
LDPAVLETFP  TLAFAEVKEL  RIGKGSLECA  VCLSEFEDDE  TLRLLPTCSH  AFHPDCIDAW600
LASHVTCPVC  RCNLVPDPAA  APSPPSAADL  DPAPAPAPDS  TGAEDAAEPT  PLAREGEGEV660
VIDVADEERE  EERRKQEAIE  LQRIGSQRQA  MRARSGRRPA  RFPRSHSTGH  SLTTTTTTAP720
APAMVAAPEA  EGNPDRYTLR  LPEHIRREIV  AAGRLKRTRS  LLAFPSGGEE  SSRRGYRGGG780
GGGGGEGSSR  EGRSVRLGRS  ERWPNFFTRT  FSARVPAWAS  GRRSVEGSVK  KGEGEGSTRG840
KLAAAVAPFD  CFVGGGAASA  SKGGAGEEDD  EFFVVNSQTM  THVTHAQYNE  TGVIDRMTWR900
CGDR904

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help