CAZyme3D

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Entry ID

Information for CAZyme ID: CAD1821281.1

Basic Information

GenBank IDCAD1821281.1
FamilyCBM18, GH19
Sequence Length315
UniProt IDA0A6V7NRQ0(100,100)Download
Average pLDDT?58.33
CAZy50 ID149174
CAZy50 RepYes, CAD1821281.1
Structure ClusterSC_GH19_clus22
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID296719
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyBromeliaceae
GenusAnanas
SpeciesAnanas comosus
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/A0A6V7NRQ0.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKFSVFTILL  VSITASLPGV  LAEQCGSQAG  GALCPGGLCC  SKWGYCGNTP  LTATTAVRAS60
VPSPPRHRLP  SPPRRLPRLP  ALPGGDGVAS  IISSALFDEM  LKHRNDAACP  ATGSTSTKPS120
SRPPTHSSAS  GRRATSTPAS  GRSRRSWRRR  RTRPPAGGRL  PRMDRMRGVT  AFWRRWAPLP180
TTAFRARTIT  TTARRGSPRS  GPAQQPGLGG  DGSEDLVRDR  TLVLDDPSVA  QPSCHDVITD240
RWTPSAADVS  AGRLPGYGVI  TNIINGGLEC  GHGPDNRVAD  RIGFYKRYCD  IFGVSYGDNL300
DCYNQKPFNS  GRAVE315

Predicted 3D structure by AlphaFold2 with pLDDT = 58.33 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKFSVFTILL  VSITASLPGV  LAEQCGSQAG  GALCPGGLCC  SKWGYCGNTP  LTATTAVRAS60
VPSPPRHRLP  SPPRRLPRLP  ALPGGDGVAS  IISSALFDEM  LKHRNDAACP  ATGSTSTKPS120
SRPPTHSSAS  GRRATSTPAS  GRSRRSWRRR  RTRPPAGGRL  PRMDRMRGVT  AFWRRWAPLP180
TTAFRARTIT  TTARRGSPRS  GPAQQPGLGG  DGSEDLVRDR  TLVLDDPSVA  QPSCHDVITD240
RWTPSAADVS  AGRLPGYGVI  TNIINGGLEC  GHGPDNRVAD  RIGFYKRYCD  IFGVSYGDNL300
DCYNQKPFNS  GRAVE315

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(24-50)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help