CAZyme3D

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Entry ID

Information for CAZyme ID: CAC43715.1

Basic Information

GenBank IDCAC43715.1
FamilyGH32
Sequence Length266
UniProt IDA0A2K1KFF0(99.6,95.5)Download
Average pLDDT?87.81
CAZy50 ID167273
CAZy50 RepYes, CAC43715.1
Structure ClusterSC_GH32_clus36
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3218
KingdomEukaryota
PhylumStreptophyta
ClassBryopsida
OrderFunariales
FamilyFunariaceae
GenusPhyscomitrium
SpeciesPhyscomitrium patens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

RRAGQAEDET  RGNESSSVQD  DIEKGWSSVQ  CLPRHIWLDE  ESSANLVQWP  IEEVDKLRRN60
EMTEKNVEVG  VGKVVPVKAA  KGAQLDIVVD  FALPEKSEGL  EQNPNLLAEM  GHLTCSDLVP120
KGSNAAGPHS  FGPFGVHVLA  TGDLQERTSI  FFHLIHDGKH  QNWKTLFCGD  QSQSSLQQDV180
DKTVYGSYVR  VDDSDKVLSV  RILVDHSIVE  SFAQGGRTVM  TSRVYPELAV  KDAAHVFLFN240
NGTEPVTVKS  VSTWEMKSVN  IKFYKP266

Predicted 3D structure by AlphaFold2 with pLDDT = 87.81 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

RRAGQAEDET  RGNESSSVQD  DIEKGWSSVQ  CLPRHIWLDE  ESSANLVQWP  IEEVDKLRRN60
EMTEKNVEVG  VGKVVPVKAA  KGAQLDIVVD  FALPEKSEGL  EQNPNLLAEM  GHLTCSDLVP120
KGSNAAGPHS  FGPFGVHVLA  TGDLQERTSI  FFHLIHDGKH  QNWKTLFCGD  QSQSSLQQDV180
DKTVYGSYVR  VDDSDKVLSV  RILVDHSIVE  SFAQGGRTVM  TSRVYPELAV  KDAAHVFLFN240
NGTEPVTVKS  VSTWEMKSVN  IKFYKP266

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MEQSFHPTMA  AKHRVMLLAS  AMILLAALFS  PVEASHKDWH  QLGVESIKSS  SSATHVYQPY60
RTAYHFQPRK  NWMNDPNGPL  YYKGWYHFFY  QYNRDAAVWG  NITWGHAVSR  DMVHWRTLHT120
ALKGDKWYDM  KGVWSGSATF  LDNGVPVLLY  TGWAINGTDQ  SSIRGQTQAM  AVPEDPSDPL180
LREWDKSPHN  PIALAPPGFN  DSMFRDPTEA  WKGYDGVWRM  LVGAVKGTDQ  SIGTALLYKS240
TDFNKWNFTG  EIQSVAGTGM  WECPDIYPVH  VKEKTGLRLS  ARGPHVKHVL  KVSLDRNKHD300
YYSVGTYDEK  TDLYTPDDTK  LDTGLGLRYD  YGKFYASKTF  FDQNKNRRVL  WGWANESSSV360
QDDIEKGWSS  VQCLPRHIWL  DEESSANLVQ  WPIEEVDKLR  RNEMTEKNVE  VGVGKVVPVK420
AAKGAQLDIV  VDFALPEKSE  GLEQNPNLLA  EMGHLTCSDL  VTKGSNAAGP  HSFGPFGVHV480
LATGDLQERT  SIFFHLIHDG  KHQNWKTLFC  GDQSQSSLQQ  DVDKTVYGSY  VRVDDSDKVL540
SVRILVDHSI  VESFAQGGRT  VMTSRVYPEL  AVKDAAHVFL  FNNGTEPVTV  KSVSTWEMKS600
VNIKFYKP608

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help