CAZyme3D

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Entry ID

Information for CAZyme ID: CAC12002.1

Basic Information

GenBank IDCAC12002.1
FamilyGT2
Sequence Length404
UniProt IDQ9HJU0(100,100)Download
Average pLDDT?87.97
CAZy50 ID96649
CAZy50 RepYes, CAC12002.1
Structure ClusterSC_GT2_clus384
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2303
KingdomArchaea
PhylumCandidatus Thermoplasmatota
ClassThermoplasmata
OrderThermoplasmatales
FamilyThermoplasmataceae
GenusThermoplasma
SpeciesThermoplasma acidophilum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVFGLISSFY  YIVNSYNSMK  YRRKHNDKSG  DDFTAKDVTI  VMPVYKEDPI  VFEESVASAS60
QQGSQVYVLG  DDCDEPYKSI  AEKHGCAFIR  VSPHRGKRGI  LSYSMKIVKT  PLVMFLDSDT120
VLDHGAVEDM  IKYLEEDVGG  VGTNISIFRN  GHPVSYTSEF  VERVREVIFK  SMSRKSSVMV180
LDGRCALYRT  NLVMPFLTSR  EFQDNTVMGK  KSVLGDDRQL  TSYIIRSGYR  AVKDYDVYAR240
TYQYSSFKKF  FKQQIRWGRV  GWTYFFKDIA  SGSARKAGPL  YTFNLIYMYL  LPIFTAVIGI300
MTLIYVLPHI  HILFYGVIPS  MRADPYLIHR  IVRDHRVPLL  FVARSFVDFL  TSASAVIFGV360
SISTTMKGEK  AKVFAYGSIG  LLMMFVSTIY  ALFTFYKQDR  WLTR404

Predicted 3D structure by AlphaFold2 with pLDDT = 87.97 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVFGLISSFY  YIVNSYNSMK  YRRKHNDKSG  DDFTAKDVTI  VMPVYKEDPI  VFEESVASAS60
QQGSQVYVLG  DDCDEPYKSI  AEKHGCAFIR  VSPHRGKRGI  LSYSMKIVKT  PLVMFLDSDT120
VLDHGAVEDM  IKYLEEDVGG  VGTNISIFRN  GHPVSYTSEF  VERVREVIFK  SMSRKSSVMV180
LDGRCALYRT  NLVMPFLTSR  EFQDNTVMGK  KSVLGDDRQL  TSYIIRSGYR  AVKDYDVYAR240
TYQYSSFKKF  FKQQIRWGRV  GWTYFFKDIA  SGSARKAGPL  YTFNLIYMYL  LPIFTAVIGI300
MTLIYVLPHI  HILFYGVIPS  MRADPYLIHR  IVRDHRVPLL  FVARSFVDFL  TSASAVIFGV360
SISTTMKGEK  AKVFAYGSIG  LLMMFVSTIY  ALFTFYKQDR  WLTR404

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(37-258)

MVFGLISSFY  YIVNSYNSMK  YRRKHNDKSG  DDFTAKDVTI  VMPVYKEDPI  VFEESVASAS60
QQGSQVYVLG  DDCDEPYKSI  AEKHGCAFIR  VSPHRGKRGI  LSYSMKIVKT  PLVMFLDSDT120
VLDHGAVEDM  IKYLEEDVGG  VGTNISIFRN  GHPVSYTSEF  VERVREVIFK  SMSRKSSVMV180
LDGRCALYRT  NLVMPFLTSR  EFQDNTVMGK  KSVLGDDRQL  TSYIIRSGYR  AVKDYDVYAR240
TYQYSSFKKF  FKQQIRWGRV  GWTYFFKDIA  SGSARKAGPL  YTFNLIYMYL  LPIFTAVIGI300
MTLIYVLPHI  HILFYGVIPS  MRADPYLIHR  IVRDHRVPLL  FVARSFVDFL  TSASAVIFGV360
SISTTMKGEK  AKVFAYGSIG  LLMMFVSTIY  ALFTFYKQDR  WLTR404

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help