CAZyme3D

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Entry ID

Information for CAZyme ID: CAB78997.1

Basic Information

GenBank IDCAB78997.1
FamilyGT77
Sequence Length715
UniProt IDO49424(100,100)Download
Average pLDDT?77.14
CAZy50 ID36836
CAZy50 RepYes, CAB78997.1
Structure ClusterSC_GT77_clus14
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKSTNDESPS  LGYDFAGVSI  KDGKSKPPAP  VICYDGLFGG  RDVIRIVLLV  TTVTLSCLLF60
YKSANNPLNM  VFSPWKTDCY  ASKLTNESSS  KTEPKKEPVS  ELERVLMNAA  MEDNTVIITA120
LNQAWAEPNS  TFDVFRESFK  VGIETERLLK  HVIAVCLDIK  AYDQCLKVHP  HCYLINATDS180
DQLSGPNRFM  TPGYLKLIWR  RMDLLRQVIG  LGYNFIFTDA  DILWLRDPFP  RFFPDADFQI240
TCDDYNGRPS  DKKNHVNSGF  TYVKANNKTS  KFYKYWIRSS  RKFPGKHDQD  VFNFIKNDLH300
VEKLGIKMRF  FDTVYFGGFC  QPSRDINVVN  TMHANCCIGL  DNKVNNLKAA  LEDWKRYVSL360
NTTVSETKWN  IPPSFLDYGS  AIGQKEVKKI  LVLVLGLAAC  LLLYKTAYPL  HQELDVNNLS420
SRPLLDHTSS  SSPLTRSKSI  SFREVLENAS  TENRTVIVTT  LNQAWAEPNS  LFDLFLESFR480
IGQGTKKLLQ  HVVVVCLDSK  AFARCSQLHP  NCYYLKTTGT  DFSGEKLFAT  PDYLKMMWRR540
IELLTQVLEM  GYNFIFTDAD  IMWLRDPFPR  LYPDGDFQMA  CDRFFGDPHD  SDNWVNGGFT600
YVKSNHRSIE  FYKFWYNSRL  DYPKMHDQDV  FNQIKHKALV  SEIGIQMRFF  DTVYFGGFCQ660
TSRDINLVCT  MHANCCVGLA  KKLHDLNLVL  DDWRNYLSLS  EPVKNTTWSV  PMKCT715

Predicted 3D structure by AlphaFold2 with pLDDT = 77.14 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKSTNDESPS  LGYDFAGVSI  KDGKSKPPAP  VICYDGLFGG  RDVIRIVLLV  TTVTLSCLLF60
YKSANNPLNM  VFSPWKTDCY  ASKLTNESSS  KTEPKKEPVS  ELERVLMNAA  MEDNTVIITA120
LNQAWAEPNS  TFDVFRESFK  VGIETERLLK  HVIAVCLDIK  AYDQCLKVHP  HCYLINATDS180
DQLSGPNRFM  TPGYLKLIWR  RMDLLRQVIG  LGYNFIFTDA  DILWLRDPFP  RFFPDADFQI240
TCDDYNGRPS  DKKNHVNSGF  TYVKANNKTS  KFYKYWIRSS  RKFPGKHDQD  VFNFIKNDLH300
VEKLGIKMRF  FDTVYFGGFC  QPSRDINVVN  TMHANCCIGL  DNKVNNLKAA  LEDWKRYVSL360
NTTVSETKWN  IPPSFLDYGS  AIGQKEVKKI  LVLVLGLAAC  LLLYKTAYPL  HQELDVNNLS420
SRPLLDHTSS  SSPLTRSKSI  SFREVLENAS  TENRTVIVTT  LNQAWAEPNS  LFDLFLESFR480
IGQGTKKLLQ  HVVVVCLDSK  AFARCSQLHP  NCYYLKTTGT  DFSGEKLFAT  PDYLKMMWRR540
IELLTQVLEM  GYNFIFTDAD  IMWLRDPFPR  LYPDGDFQMA  CDRFFGDPHD  SDNWVNGGFT600
YVKSNHRSIE  FYKFWYNSRL  DYPKMHDQDV  FNQIKHKALV  SEIGIQMRFF  DTVYFGGFCQ660
TSRDINLVCT  MHANCCVGLA  KKLHDLNLVL  DDWRNYLSLS  EPVKNTTWSV  PMKCT715

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT77(149-346)+GT77(489-686)

MKSTNDESPS  LGYDFAGVSI  KDGKSKPPAP  VICYDGLFGG  RDVIRIVLLV  TTVTLSCLLF60
YKSANNPLNM  VFSPWKTDCY  ASKLTNESSS  KTEPKKEPVS  ELERVLMNAA  MEDNTVIITA120
LNQAWAEPNS  TFDVFRESFK  VGIETERLLK  HVIAVCLDIK  AYDQCLKVHP  HCYLINATDS180
DQLSGPNRFM  TPGYLKLIWR  RMDLLRQVIG  LGYNFIFTDA  DILWLRDPFP  RFFPDADFQI240
TCDDYNGRPS  DKKNHVNSGF  TYVKANNKTS  KFYKYWIRSS  RKFPGKHDQD  VFNFIKNDLH300
VEKLGIKMRF  FDTVYFGGFC  QPSRDINVVN  TMHANCCIGL  DNKVNNLKAA  LEDWKRYVSL360
NTTVSETKWN  IPPSFLDYGS  AIGQKEVKKI  LVLVLGLAAC  LLLYKTAYPL  HQELDVNNLS420
SRPLLDHTSS  SSPLTRSKSI  SFREVLENAS  TENRTVIVTT  LNQAWAEPNS  LFDLFLESFR480
IGQGTKKLLQ  HVVVVCLDSK  AFARCSQLHP  NCYYLKTTGT  DFSGEKLFAT  PDYLKMMWRR540
IELLTQVLEM  GYNFIFTDAD  IMWLRDPFPR  LYPDGDFQMA  CDRFFGDPHD  SDNWVNGGFT600
YVKSNHRSIE  FYKFWYNSRL  DYPKMHDQDV  FNQIKHKALV  SEIGIQMRFF  DTVYFGGFCQ660
TSRDINLVCT  MHANCCVGLA  KKLHDLNLVL  DDWRNYLSLS  EPVKNTTWSV  PMKCT715

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help