Information for CAZyme ID: CAB78997.1
Basic Information
GenBank ID | CAB78997.1 |
Family | GT77 |
Sequence Length | 715 |
UniProt ID | O49424(100,100)![]() |
Average pLDDT? | 77.14 |
CAZy50 ID | 36836 |
CAZy50 Rep | Yes, CAB78997.1 |
Structure Cluster | SC_GT77_clus14 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 3702 |
Kingdom | Eukaryota |
Phylum | Streptophyta |
Class | Magnoliopsida |
Order | Brassicales |
Family | Brassicaceae |
Genus | Arabidopsis |
Species | Arabidopsis thaliana |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MKSTNDESPS LGYDFAGVSI KDGKSKPPAP VICYDGLFGG RDVIRIVLLV TTVTLSCLLF | 60 |
YKSANNPLNM VFSPWKTDCY ASKLTNESSS KTEPKKEPVS ELERVLMNAA MEDNTVIITA | 120 |
LNQAWAEPNS TFDVFRESFK VGIETERLLK HVIAVCLDIK AYDQCLKVHP HCYLINATDS | 180 |
DQLSGPNRFM TPGYLKLIWR RMDLLRQVIG LGYNFIFTDA DILWLRDPFP RFFPDADFQI | 240 |
TCDDYNGRPS DKKNHVNSGF TYVKANNKTS KFYKYWIRSS RKFPGKHDQD VFNFIKNDLH | 300 |
VEKLGIKMRF FDTVYFGGFC QPSRDINVVN TMHANCCIGL DNKVNNLKAA LEDWKRYVSL | 360 |
NTTVSETKWN IPPSFLDYGS AIGQKEVKKI LVLVLGLAAC LLLYKTAYPL HQELDVNNLS | 420 |
SRPLLDHTSS SSPLTRSKSI SFREVLENAS TENRTVIVTT LNQAWAEPNS LFDLFLESFR | 480 |
IGQGTKKLLQ HVVVVCLDSK AFARCSQLHP NCYYLKTTGT DFSGEKLFAT PDYLKMMWRR | 540 |
IELLTQVLEM GYNFIFTDAD IMWLRDPFPR LYPDGDFQMA CDRFFGDPHD SDNWVNGGFT | 600 |
YVKSNHRSIE FYKFWYNSRL DYPKMHDQDV FNQIKHKALV SEIGIQMRFF DTVYFGGFCQ | 660 |
TSRDINLVCT MHANCCVGLA KKLHDLNLVL DDWRNYLSLS EPVKNTTWSV PMKCT | 715 |
Predicted 3D structure by AlphaFold2 with pLDDT = 77.14 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MKSTNDESPS LGYDFAGVSI KDGKSKPPAP VICYDGLFGG RDVIRIVLLV TTVTLSCLLF | 60 |
YKSANNPLNM VFSPWKTDCY ASKLTNESSS KTEPKKEPVS ELERVLMNAA MEDNTVIITA | 120 |
LNQAWAEPNS TFDVFRESFK VGIETERLLK HVIAVCLDIK AYDQCLKVHP HCYLINATDS | 180 |
DQLSGPNRFM TPGYLKLIWR RMDLLRQVIG LGYNFIFTDA DILWLRDPFP RFFPDADFQI | 240 |
TCDDYNGRPS DKKNHVNSGF TYVKANNKTS KFYKYWIRSS RKFPGKHDQD VFNFIKNDLH | 300 |
VEKLGIKMRF FDTVYFGGFC QPSRDINVVN TMHANCCIGL DNKVNNLKAA LEDWKRYVSL | 360 |
NTTVSETKWN IPPSFLDYGS AIGQKEVKKI LVLVLGLAAC LLLYKTAYPL HQELDVNNLS | 420 |
SRPLLDHTSS SSPLTRSKSI SFREVLENAS TENRTVIVTT LNQAWAEPNS LFDLFLESFR | 480 |
IGQGTKKLLQ HVVVVCLDSK AFARCSQLHP NCYYLKTTGT DFSGEKLFAT PDYLKMMWRR | 540 |
IELLTQVLEM GYNFIFTDAD IMWLRDPFPR LYPDGDFQMA CDRFFGDPHD SDNWVNGGFT | 600 |
YVKSNHRSIE FYKFWYNSRL DYPKMHDQDV FNQIKHKALV SEIGIQMRFF DTVYFGGFCQ | 660 |
TSRDINLVCT MHANCCVGLA KKLHDLNLVL DDWRNYLSLS EPVKNTTWSV PMKCT | 715 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.