CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: CAB1345499.1

Basic Information

GenBank IDCAB1345499.1
FamilyCBM47
Sequence Length766
UniProt IDA0A6F9CAD9(100,100)Download
Average pLDDT?74.77
CAZy50 ID30945
CAZy50 RepYes, CAB1345499.1
Structure ClusterSC_CBM47_clus12
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID861768
KingdomEukaryota
PhylumChordata
ClassActinopteri
OrderSalmoniformes
FamilySalmonidae
GenusCoregonus
SpeciesCoregonus sp. 'balchen'

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEWSRRAIPV  SAQYAIDGKR  NTNYGSCTYT  EQDTNPWWRV  DLLDVTRVTA  VTITNRDDVP60
ERLDGAEIHI  GNSLENNGIN  NLSELIKNIQ  KRRKRDLTST  IKLLHQPGSG  GTTMAKQVLW120
DMRKKLRCAV  LTGPTSDITA  IAKQVIHLFT  AGSQRNQTTV  LLMLEDERIL  ENLQDAIIKE180
IAERNITTHK  PVVIILNCVH  PIYGGPSFEQ  RMEPFTHLIV  TFPARQGQDK  HVRMAHPLIA240
QQCVKTRDYL  KAVKWAKIAK  DRDPKSSFVA  DTLGQVYKNQ  LKSRIKVEQG  SIRVPKEQGS300
FKVPEEQGSI  SAQDILQLSK  KAFEAFKDEE  RAAENEQGAD  MQDDGMTKVS  SIFNNRGLFG360
YLQVANIVFD  SLVSLDKHWQ  KVLTMEISAD  SFFISIGQKK  LFKYKSLISS  LRDEVERICE420
FFDGYLIYSK  PSIEKNEPPY  FWTDVKNCYR  KYVGTCTPIH  SEFAIGIPLQ  KLKEEMAIAF480
PGLLSCLDKG  YDKTHLRRIT  ILWEEIKKEW  EKKKVGDNKA  AQNFILANII  LSKVEAASPV540
LTPLPILRRI  LERHLLANFG  NQTPEFYFLV  LLLYWPEEHK  KMDFDIDLNK  HVLEMQDSYE600
NTYKKYLRSR  YLRPLIFLAK  GEGLSRLVHS  SKIDNLLARE  NPMARPKARQ  DFITKKWNSG660
EVWREPVVQD  LLLPVNGVVR  QHRVFACVDG  KEIEVCAYQQ  SKVWMSGDVC  FYLGFTIRGP720
VAYGIHYPSH  SDRIKEEEPR  KKLEVPDIKS  MKDDQHFVDF  HRTDLI766

Predicted 3D structure by AlphaFold2 with pLDDT = 74.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEWSRRAIPV  SAQYAIDGKR  NTNYGSCTYT  EQDTNPWWRV  DLLDVTRVTA  VTITNRDDVP60
ERLDGAEIHI  GNSLENNGIN  NLSELIKNIQ  KRRKRDLTST  IKLLHQPGSG  GTTMAKQVLW120
DMRKKLRCAV  LTGPTSDITA  IAKQVIHLFT  AGSQRNQTTV  LLMLEDERIL  ENLQDAIIKE180
IAERNITTHK  PVVIILNCVH  PIYGGPSFEQ  RMEPFTHLIV  TFPARQGQDK  HVRMAHPLIA240
QQCVKTRDYL  KAVKWAKIAK  DRDPKSSFVA  DTLGQVYKNQ  LKSRIKVEQG  SIRVPKEQGS300
FKVPEEQGSI  SAQDILQLSK  KAFEAFKDEE  RAAENEQGAD  MQDDGMTKVS  SIFNNRGLFG360
YLQVANIVFD  SLVSLDKHWQ  KVLTMEISAD  SFFISIGQKK  LFKYKSLISS  LRDEVERICE420
FFDGYLIYSK  PSIEKNEPPY  FWTDVKNCYR  KYVGTCTPIH  SEFAIGIPLQ  KLKEEMAIAF480
PGLLSCLDKG  YDKTHLRRIT  ILWEEIKKEW  EKKKVGDNKA  AQNFILANII  LSKVEAASPV540
LTPLPILRRI  LERHLLANFG  NQTPEFYFLV  LLLYWPEEHK  KMDFDIDLNK  HVLEMQDSYE600
NTYKKYLRSR  YLRPLIFLAK  GEGLSRLVHS  SKIDNLLARE  NPMARPKARQ  DFITKKWNSG660
EVWREPVVQD  LLLPVNGVVR  QHRVFACVDG  KEIEVCAYQQ  SKVWMSGDVC  FYLGFTIRGP720
VAYGIHYPSH  SDRIKEEEPR  KKLEVPDIKS  MKDDQHFVDF  HRTDLI766

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM47(11-83)

MEWSRRAIPV  SAQYAIDGKR  NTNYGSCTYT  EQDTNPWWRV  DLLDVTRVTA  VTITNRDDVP60
ERLDGAEIHI  GNSLENNGIN  NLSELIKNIQ  KRRKRDLTST  IKLLHQPGSG  GTTMAKQVLW120
DMRKKLRCAV  LTGPTSDITA  IAKQVIHLFT  AGSQRNQTTV  LLMLEDERIL  ENLQDAIIKE180
IAERNITTHK  PVVIILNCVH  PIYGGPSFEQ  RMEPFTHLIV  TFPARQGQDK  HVRMAHPLIA240
QQCVKTRDYL  KAVKWAKIAK  DRDPKSSFVA  DTLGQVYKNQ  LKSRIKVEQG  SIRVPKEQGS300
FKVPEEQGSI  SAQDILQLSK  KAFEAFKDEE  RAAENEQGAD  MQDDGMTKVS  SIFNNRGLFG360
YLQVANIVFD  SLVSLDKHWQ  KVLTMEISAD  SFFISIGQKK  LFKYKSLISS  LRDEVERICE420
FFDGYLIYSK  PSIEKNEPPY  FWTDVKNCYR  KYVGTCTPIH  SEFAIGIPLQ  KLKEEMAIAF480
PGLLSCLDKG  YDKTHLRRIT  ILWEEIKKEW  EKKKVGDNKA  AQNFILANII  LSKVEAASPV540
LTPLPILRRI  LERHLLANFG  NQTPEFYFLV  LLLYWPEEHK  KMDFDIDLNK  HVLEMQDSYE600
NTYKKYLRSR  YLRPLIFLAK  GEGLSRLVHS  SKIDNLLARE  NPMARPKARQ  DFITKKWNSG660
EVWREPVVQD  LLLPVNGVVR  QHRVFACVDG  KEIEVCAYQQ  SKVWMSGDVC  FYLGFTIRGP720
VAYGIHYPSH  SDRIKEEEPR  KKLEVPDIKS  MKDDQHFVDF  HRTDLI766

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help