CAZyme3D

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Entry ID

Information for CAZyme ID: CAB1321091.1

Basic Information

GenBank IDCAB1321091.1
FamilyGT47, GT64
Sequence Length381
UniProt IDA0A6F9ACC7(100,100)Download
Average pLDDT?73.80
CAZy50 ID111141
CAZy50 RepYes, CAB1321091.1
Structure ClusterSC_GT47_clus38, SC_GT64_clus37
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID861768
KingdomEukaryota
PhylumChordata
ClassActinopteri
OrderSalmoniformes
FamilySalmonidae
GenusCoregonus
SpeciesCoregonus sp. 'balchen'

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MREAALHRET  AGAEKYDYRE  MLHNSTFCLV  PRGRRLGSFR  FLEALQAACV  PVMLSNGWEL60
PFSEIINWNT  AAVIGDERLL  LQIPSTVRSI  HQDNILALRQ  QTQFLWEAYF  SSMEKIVLTT120
LEIIQDRVLQ  QESRSTLMWN  SHPGGLFALP  QYKTFTAVIH  AVTPLVSQSQ  PILKLLVAVA180
KSQYCAQIIV  LWNCDKPLPA  KHRWPATSVP  VIVIEGENKT  IVTDAVLSLD  EDTVLSTTER240
LVGYPARSHF  WDSNKERWGY  TSKYYHFLFT  NLFFLLRYYH  FLYTNFLPAS  LKGMVDQLAN300
CEDILMNFLV  SAVTKLPPIK  SSRASRWADP  DHFAQRQTCM  NKFASWFGGM  PMVHSQMRLD360
PVLFKDQVSI  LRKKYRDIER  L381

Predicted 3D structure by AlphaFold2 with pLDDT = 73.80 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MREAALHRET  AGAEKYDYRE  MLHNSTFCLV  PRGRRLGSFR  FLEALQAACV  PVMLSNGWEL60
PFSEIINWNT  AAVIGDERLL  LQIPSTVRSI  HQDNILALRQ  QTQFLWEAYF  SSMEKIVLTT120
LEIIQDRVLQ  QESRSTLMWN  SHPGGLFALP  QYKTFTAVIH  AVTPLVSQSQ  PILKLLVAVA180
KSQYCAQIIV  LWNCDKPLPA  KHRWPATSVP  VIVIEGENKT  IVTDAVLSLD  EDTVLSTTER240
LVGYPARSHF  WDSNKERWGY  TSKYYHFLFT  NLFFLLRYYH  FLYTNFLPAS  LKGMVDQLAN300
CEDILMNFLV  SAVTKLPPIK  SSRASRWADP  DHFAQRQTCM  NKFASWFGGM  PMVHSQMRLD360
PVLFKDQVSI  LRKKYRDIER  L381

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT64(155-364)

MREAALHRET  AGAEKYDYRE  MLHNSTFCLV  PRGRRLGSFR  FLEALQAACV  PVMLSNGWEL60
PFSEIINWNT  AAVIGDERLL  LQIPSTVRSI  HQDNILALRQ  QTQFLWEAYF  SSMEKIVLTT120
LEIIQDRVLQ  QESRSTLMWN  SHPGGLFALP  QYKTFTAVIH  AVTPLVSQSQ  PILKLLVAVA180
KSQYCAQIIV  LWNCDKPLPA  KHRWPATSVP  VIVIEGENKT  IVTDAVLSLD  EDTVLSTTER240
LVGYPARSHF  WDSNKERWGY  TSKYYHFLFT  NLFFLLRYYH  FLYTNFLPAS  LKGMVDQLAN300
CEDILMNFLV  SAVTKLPPIK  SSRASRWADP  DHFAQRQTCM  NKFASWFGGM  PMVHSQMRLD360
PVLFKDQVSI  LRKKYRDIER  L381

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help