Basic information |
Taxonomy |
Protein Sequence |
Structure visualization |
Binding Residues |
dbCAN domains |
Homology within Cluster
Information for CAZyme ID: CAB1313664.1
Basic Information
| GenBank ID | CAB1313664.1 |
| Family | GH38 |
| Sequence Length | 1369 |
| UniProt ID | A0A6F8ZRH8(100,100) |
| Average pLDDT? | 77.47 |
| CAZy50 ID | 5255 |
| CAZy50 Rep | Yes, CAB1313664.1 |
| Structure Cluster | SC_GH38_clus33 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 861768 |
| Kingdom | Eukaryota |
| Phylum | Chordata |
| Class | Actinopteri |
| Order | Salmoniformes |
| Family | Salmonidae |
| Genus | Coregonus |
| Species | Coregonus sp. 'balchen' |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKLKKQVTVC GGAIFCVAVF SLYLMLDRVQ HDPARRQNGG GNFPRSQISV LQNRIEQLEQ | 60 |
| LLEENHQIIS HIKDSVLELT DTGAVSPSGQ LPFRSANGSW VLPFDGRPTF LSVKPQDCQF | 120 |
| AQGPRGQTDL QMLDVYSLLK FDNVDGGVWK QGFEITYEPG EWDSEPLQVF VVPHSHNDPG | 180 |
| WIKTFDKYYT DQTQHIFNNM LVKLTEDPRR KFIWSEISFF AKWWESADMH KQEAMRKLIL | 240 |
| GGQLEMVTGG WVMTDEANVH YFAMIDQLIE GHQWLEKNLG VTPRSGWAVD PFGHSATMPY | 300 |
| LLKRANLTSM LIQRVHYSIK KHFASSRSLE FMWRQAWDQK SGTDIFCHMM PFYSYDVPHT | 360 |
| CGPDPKICCQ FDFKRLPGGR VNCPWKVPPR AVVEANVAER AHLLLDQYRK KSKLFRSKVV | 420 |
| LVPLGDDFRY DKALEWDQQY LNYQRLFDYM NSHPEMHVQA QFGTLTDYFT AVYKANSVPQ | 480 |
| GARPPDYPVL SGDFFAYADR EDHYWSGYYT SRPFYKSMDR VLESHLRGAE ILFSLAVAHA | 540 |
| RRAGMEGRYP TSDYTLLTDA RRTVALFQHH DAITGTAKEN VVIDYGNRLL RSLQGLKRVI | 600 |
| INAAHFLVMK NKDVYRFYQT EPFLETDDRR ATQDSLPQRT LIELDQSGPR YLVLFNPVEQ | 660 |
| DRLCVVTVLV NSARVRVLTE DGQTLPVQLS AQWSSSSQMS AEVFQASFMV RLPALGLAVF | 720 |
| HLYDSADTPM TLRSETLLRL SGRGQTAHAV DPLPLRSQTA DTQPFYISTQ SLTLGFSGTT | 780 |
| GLLEVRGGEE AQAAAQMAPY SIRRKDDPQE LKVQIQFVTY GTRSSKDKSG AYLFLPDGKA | 840 |
| KPYSQKEPLV VRVVEGPLFS EVVALYQHFQ QTIRIHNVPG VDGLSLDVTT MVDIREQSNK | 900 |
| ELAMRLVTDI QSDDTFYTDL NGFQMQPRRR FLKLPLQANF YPMPSQAYIQ DSQHRLTLHS | 960 |
| AQALGQLEVI LDRRLMQDDN RGLGQGLKDN KKTANRFRLL LESRSTGNKV VDSGPTSFPS | 1020 |
| LLSHMTSAIL NHEVLALPVL PKKRGIPSLH TFAPLTGALP CDFHVINLRS IQHQQDTHSP | 1080 |
| SPYTALILHR KGLDCGLETP NPGINCTTTE GQEDCLPVHR GVATLGLPGI CLKARSRIHP | 1140 |
| ASLDLQKIHT SQIPSTTVDP SSHPLQLGQR GQTKLPLNNP YKYIKMGTHS TAGLDTLPCL | 1200 |
| SQPSPRPKPP EAHPPVSTEC SLVLRAQGAP PERSCSRRKT PAKAARMKAQ LSIARRDGAS | 1260 |
| GGLALDLVLV QAGGEDQVAV RGAREAIAGP GSGTGEASRV AWQAGLGRGQ VHPIVQGHVE | 1320 |
| ELGACSEAGG AELHTTLQEQ GEAWAAFWKG GERGRGKERE EEMSERKRK | 1369 |
Predicted 3D structure by AlphaFold2 with pLDDT = 77.47 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKLKKQVTVC GGAIFCVAVF SLYLMLDRVQ HDPARRQNGG GNFPRSQISV LQNRIEQLEQ | 60 |
| LLEENHQIIS HIKDSVLELT DTGAVSPSGQ LPFRSANGSW VLPFDGRPTF LSVKPQDCQF | 120 |
| AQGPRGQTDL QMLDVYSLLK FDNVDGGVWK QGFEITYEPG EWDSEPLQVF VVPHSHNDPG | 180 |
| WIKTFDKYYT DQTQHIFNNM LVKLTEDPRR KFIWSEISFF AKWWESADMH KQEAMRKLIL | 240 |
| GGQLEMVTGG WVMTDEANVH YFAMIDQLIE GHQWLEKNLG VTPRSGWAVD PFGHSATMPY | 300 |
| LLKRANLTSM LIQRVHYSIK KHFASSRSLE FMWRQAWDQK SGTDIFCHMM PFYSYDVPHT | 360 |
| CGPDPKICCQ FDFKRLPGGR VNCPWKVPPR AVVEANVAER AHLLLDQYRK KSKLFRSKVV | 420 |
| LVPLGDDFRY DKALEWDQQY LNYQRLFDYM NSHPEMHVQA QFGTLTDYFT AVYKANSVPQ | 480 |
| GARPPDYPVL SGDFFAYADR EDHYWSGYYT SRPFYKSMDR VLESHLRGAE ILFSLAVAHA | 540 |
| RRAGMEGRYP TSDYTLLTDA RRTVALFQHH DAITGTAKEN VVIDYGNRLL RSLQGLKRVI | 600 |
| INAAHFLVMK NKDVYRFYQT EPFLETDDRR ATQDSLPQRT LIELDQSGPR YLVLFNPVEQ | 660 |
| DRLCVVTVLV NSARVRVLTE DGQTLPVQLS AQWSSSSQMS AEVFQASFMV RLPALGLAVF | 720 |
| HLYDSADTPM TLRSETLLRL SGRGQTAHAV DPLPLRSQTA DTQPFYISTQ SLTLGFSGTT | 780 |
| GLLEVRGGEE AQAAAQMAPY SIRRKDDPQE LKVQIQFVTY GTRSSKDKSG AYLFLPDGKA | 840 |
| KPYSQKEPLV VRVVEGPLFS EVVALYQHFQ QTIRIHNVPG VDGLSLDVTT MVDIREQSNK | 900 |
| ELAMRLVTDI QSDDTFYTDL NGFQMQPRRR FLKLPLQANF YPMPSQAYIQ DSQHRLTLHS | 960 |
| AQALGQLEVI LDRRLMQDDN RGLGQGLKDN KKTANRFRLL LESRSTGNKV VDSGPTSFPS | 1020 |
| LLSHMTSAIL NHEVLALPVL PKKRGIPSLH TFAPLTGALP CDFHVINLRS IQHQQDTHSP | 1080 |
| SPYTALILHR KGLDCGLETP NPGINCTTTE GQEDCLPVHR GVATLGLPGI CLKARSRIHP | 1140 |
| ASLDLQKIHT SQIPSTTVDP SSHPLQLGQR GQTKLPLNNP YKYIKMGTHS TAGLDTLPCL | 1200 |
| SQPSPRPKPP EAHPPVSTEC SLVLRAQGAP PERSCSRRKT PAKAARMKAQ LSIARRDGAS | 1260 |
| GGLALDLVLV QAGGEDQVAV RGAREAIAGP GSGTGEASRV AWQAGLGRGQ VHPIVQGHVE | 1320 |
| ELGACSEAGG AELHTTLQEQ GEAWAAFWKG GERGRGKERE EEMSERKRK | 1369 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.