CAZyme3D

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Entry ID

Information for CAZyme ID: CAA94876.2

Basic Information

GenBank IDCAA94876.2
FamilyGT31
Sequence Length254
UniProt IDQ17419(100,100)Download
Average pLDDT?67.36
CAZy50 ID170727
CAZy50 RepYes, CAA94876.2
Structure ClusterSC_GT31_clus107
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID6239
KingdomEukaryota
PhylumNematoda
ClassChromadorea
OrderRhabditida
FamilyRhabditidae
GenusCaenorhabditis
SpeciesCaenorhabditis elegans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKFYIIITLL  CSEVIGKFGR  IGGIGGAKSI  GRGGGGARFG  VGRGGGASTV  RGSSVYSGGF60
RTGTSGWKTG  TSSSSNSYGS  NSFRSTIFAS  LYSHAHSPIF  SHSLTNALII  SSLARPITYD120
NRQYYWDSRY  AQEKISPTEF  PVMCEYQIGE  DDGQLQNVTF  ANGSHARSLF  FGCPGSMLDC180
CGMYCCHNIG  EYIFKGILFT  IIAVFVVCVM  CSSMIEDNRK  NNFLRCGNSR  TTRTRTETDI240
PMIKVSQAES  PVKL254

Predicted 3D structure by AlphaFold2 with pLDDT = 67.36 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKFYIIITLL  CSEVIGKFGR  IGGIGGAKSI  GRGGGGARFG  VGRGGGASTV  RGSSVYSGGF60
RTGTSGWKTG  TSSSSNSYGS  NSFRSTIFAS  LYSHAHSPIF  SHSLTNALII  SSLARPITYD120
NRQYYWDSRY  AQEKISPTEF  PVMCEYQIGE  DDGQLQNVTF  ANGSHARSLF  FGCPGSMLDC180
CGMYCCHNIG  EYIFKGILFT  IIAVFVVCVM  CSSMIEDNRK  NNFLRCGNSR  TTRTRTETDI240
PMIKVSQAES  PVKL254

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MKFYIIITLL  CSEVIGKFGR  IGGIGGAKSI  GRGGGGARFG  VGRGGGASTV  RGSSVYSGGF60
RTGTSGWKTG  TSSSSNSYGS  NSFRSTIFAS  LYSHAHSPIF  SHSLTNALII  SSLARPITYD120
NRQYYWDSRY  AQEKISPTEF  PVMCEYQIGE  DDGQLQNVTF  ANGSHARSLF  FGCPGSMLDC180
CGMYCCHNIG  EYIFKGILFT  IIAVFVVCVM  CSSMIEDNRK  NNFLRCGNSR  TTRTRTETDI240
PMIKVSQAES  PVKL254

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help